89 particle_set, cell, pot_manybody, para_env, mm_section, use_virial)
96 REAL(
dp),
INTENT(INOUT) :: pot_manybody
99 LOGICAL,
INTENT(IN) :: use_virial
101 CHARACTER(LEN=*),
PARAMETER :: routinen =
'energy_manybody'
103 INTEGER :: atom_a, atom_b, handle, i, iend, ifirst, igrp, ikind, ilast, ilist, indexa, &
104 ipair, iparticle, iparticle_local, istart, iunique, jkind, junique, mpair, nkinds, &
105 nloc_size, npairs, nparticle, nparticle_local, nr_h3o, nr_o, nr_oh, nunique
106 INTEGER,
DIMENSION(:),
POINTER :: glob_loc_list_a, work_list
107 INTEGER,
DIMENSION(:, :),
POINTER :: glob_loc_list,
list, sort_list
108 LOGICAL :: any_ace, any_allegro, any_deepmd, &
109 any_gal, any_gal21, any_mace, &
110 any_nequip, any_siepmann, any_tersoff
111 REAL(kind=
dp) :: drij, embed, pot_ace, pot_allegro, &
112 pot_deepmd, pot_loc, pot_mace, &
113 pot_nequip, qr, rab2_max, rij(3)
114 REAL(kind=
dp),
DIMENSION(3) :: cell_v, cvi
115 REAL(kind=
dp),
DIMENSION(:, :),
POINTER :: glob_cell_v
116 REAL(kind=
dp),
POINTER :: fembed(:)
118 TYPE(
eam_type),
DIMENSION(:),
POINTER :: eam_data
125 TYPE(
pos_type),
DIMENSION(:),
POINTER :: r_last_update_pbc
129 NULLIFY (eam, siepmann, tersoff, gal, gal21)
130 any_tersoff = .false.
131 any_siepmann = .false.
134 any_allegro = .false.
139 CALL timeset(routinen, handle)
141 potparm=potparm, eam_data=eam_data)
143 DO ikind = 1,
SIZE(atomic_kind_set)
144 pot => potparm%pot(ikind, ikind)%pot
145 DO i = 1,
SIZE(pot%type)
146 IF (pot%type(i) /=
ea_type) cycle
147 eam => pot%set(i)%eam
148 nparticle =
SIZE(particle_set)
149 ALLOCATE (fembed(nparticle))
151 cpassert(
ASSOCIATED(eam_data))
153 nparticle_local = local_particles%n_el(ikind)
154 DO iparticle_local = 1, nparticle_local
155 iparticle = local_particles%list(ikind)%array(iparticle_local)
156 indexa = int(eam_data(iparticle)%rho/eam%drhoar) + 1
157 IF (indexa > eam%npoints - 1) indexa = eam%npoints - 1
158 qr = eam_data(iparticle)%rho - eam%rhoval(indexa)
160 embed = eam%frho(indexa) + qr*eam%frhop(indexa)
161 fembed(iparticle) = eam%frhop(indexa) + qr*(eam%frhop(indexa + 1) - eam%frhop(indexa))/eam%drhoar
163 pot_manybody = pot_manybody + embed
166 CALL para_env%sum(fembed)
167 DO iparticle = 1, nparticle
168 IF (particle_set(iparticle)%atomic_kind%kind_number == ikind)
THEN
169 eam_data(iparticle)%f_embed = fembed(iparticle)
177 DO ikind = 1,
SIZE(atomic_kind_set)
178 DO jkind = ikind,
SIZE(atomic_kind_set)
179 pot => potparm%pot(ikind, jkind)%pot
180 any_tersoff = any_tersoff .OR. any(pot%type ==
tersoff_type)
181 any_nequip = any_nequip .OR. any(pot%type ==
nequip_type)
182 any_mace = any_mace .OR. any(pot%type ==
mace_type)
183 any_ace = any_ace .OR. any(pot%type ==
ace_type)
184 any_allegro = any_allegro .OR. any(pot%type ==
allegro_type)
185 any_deepmd = any_deepmd .OR. any(pot%type ==
deepmd_type)
186 any_siepmann = any_siepmann .OR. any(pot%type ==
siepmann_type)
187 any_gal = any_gal .OR. any(pot%type ==
gal_type)
188 any_gal21 = any_gal21 .OR. any(pot%type ==
gal21_type)
194 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
196 atomic_kind_set, potparm, r_last_update_pbc, &
197 pot_nequip, fist_nonbond_env, &
199 pot_manybody = pot_manybody + pot_nequip
202 IF (any_allegro)
THEN
203 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
205 atomic_kind_set, potparm, r_last_update_pbc, &
206 pot_allegro, fist_nonbond_env, &
208 pot_manybody = pot_manybody + pot_allegro
212 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
214 atomic_kind_set, potparm, r_last_update_pbc, &
215 pot_mace, fist_nonbond_env, &
217 pot_manybody = pot_manybody + pot_mace
222 fist_nonbond_env, pot_ace)
223 pot_manybody = pot_manybody + pot_ace
228 fist_nonbond_env, pot_deepmd, para_env)
229 pot_manybody = pot_manybody + pot_deepmd
233 IF (any_tersoff)
THEN
234 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
235 CALL setup_tersoff_arrays(nonbonded, potparm, glob_loc_list, glob_cell_v, glob_loc_list_a, cell)
236 DO ilist = 1, nonbonded%nlists
237 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
238 npairs = neighbor_kind_pair%npairs
239 IF (npairs == 0) cycle
240 kind_group_loop:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
241 istart = neighbor_kind_pair%grp_kind_start(igrp)
242 iend = neighbor_kind_pair%grp_kind_end(igrp)
243 ikind = neighbor_kind_pair%ij_kind(1, igrp)
244 jkind = neighbor_kind_pair%ij_kind(2, igrp)
245 list => neighbor_kind_pair%list
246 cvi = neighbor_kind_pair%cell_vector
247 pot => potparm%pot(ikind, jkind)%pot
248 DO i = 1,
SIZE(pot%type)
250 rab2_max = pot%set(i)%tersoff%rcutsq
251 cell_v = matmul(cell%hmat, cvi)
252 pot => potparm%pot(ikind, jkind)%pot
253 tersoff => pot%set(i)%tersoff
254 npairs = iend - istart + 1
255 IF (npairs /= 0)
THEN
256 ALLOCATE (sort_list(2, npairs), work_list(npairs))
257 sort_list =
list(:, istart:iend)
260 CALL sort(sort_list(1, :), npairs, work_list)
262 work_list(ipair) = sort_list(2, work_list(ipair))
264 sort_list(2, :) = work_list
267 DO ipair = 1, npairs - 1
268 IF (sort_list(1, ipair + 1) /= sort_list(1, ipair)) nunique = nunique + 1
271 junique = sort_list(1, ipair)
273 DO iunique = 1, nunique
275 IF (glob_loc_list_a(ifirst) > atom_a) cycle
276 DO mpair = ifirst,
SIZE(glob_loc_list_a)
277 IF (glob_loc_list_a(mpair) == atom_a)
EXIT
280 DO mpair = ifirst,
SIZE(glob_loc_list_a)
281 IF (glob_loc_list_a(mpair) /= atom_a)
EXIT
285 IF (ifirst /= 0) nloc_size = ilast - ifirst + 1
286 DO WHILE (ipair <= npairs)
287 IF (sort_list(1, ipair) /= junique)
EXIT
288 atom_b = sort_list(2, ipair)
291 rij(:) = r_last_update_pbc(atom_b)%r(:) - r_last_update_pbc(atom_a)%r(:) + cell_v
292 drij = dot_product(rij, rij)
294 IF (drij > rab2_max) cycle
296 CALL tersoff_energy(pot_loc, tersoff, r_last_update_pbc, atom_a, atom_b, nloc_size, &
297 glob_loc_list(:, ifirst:ilast), glob_cell_v(:, ifirst:ilast), cell_v, drij)
298 pot_manybody = pot_manybody + 0.5_dp*pot_loc
301 IF (ipair <= npairs) junique = sort_list(1, ipair)
303 DEALLOCATE (sort_list, work_list)
306 END DO kind_group_loop
312 IF (any_siepmann)
THEN
313 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
318 DO ilist = 1, nonbonded%nlists
319 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
320 npairs = neighbor_kind_pair%npairs
321 IF (npairs == 0) cycle
322 kind_group_loop_2:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
323 istart = neighbor_kind_pair%grp_kind_start(igrp)
324 iend = neighbor_kind_pair%grp_kind_end(igrp)
325 ikind = neighbor_kind_pair%ij_kind(1, igrp)
326 jkind = neighbor_kind_pair%ij_kind(2, igrp)
327 list => neighbor_kind_pair%list
328 cvi = neighbor_kind_pair%cell_vector
329 pot => potparm%pot(ikind, jkind)%pot
330 DO i = 1,
SIZE(pot%type)
332 rab2_max = pot%set(i)%siepmann%rcutsq
333 cell_v = matmul(cell%hmat, cvi)
334 pot => potparm%pot(ikind, jkind)%pot
335 siepmann => pot%set(i)%siepmann
336 npairs = iend - istart + 1
337 IF (npairs /= 0)
THEN
338 ALLOCATE (sort_list(2, npairs), work_list(npairs))
339 sort_list =
list(:, istart:iend)
342 CALL sort(sort_list(1, :), npairs, work_list)
344 work_list(ipair) = sort_list(2, work_list(ipair))
346 sort_list(2, :) = work_list
349 DO ipair = 1, npairs - 1
350 IF (sort_list(1, ipair + 1) /= sort_list(1, ipair)) nunique = nunique + 1
353 junique = sort_list(1, ipair)
355 DO iunique = 1, nunique
357 IF (glob_loc_list_a(ifirst) > atom_a) cycle
358 DO mpair = ifirst,
SIZE(glob_loc_list_a)
359 IF (glob_loc_list_a(mpair) == atom_a)
EXIT
362 DO mpair = ifirst,
SIZE(glob_loc_list_a)
363 IF (glob_loc_list_a(mpair) /= atom_a)
EXIT
367 IF (ifirst /= 0) nloc_size = ilast - ifirst + 1
368 DO WHILE (ipair <= npairs)
369 IF (sort_list(1, ipair) /= junique)
EXIT
370 atom_b = sort_list(2, ipair)
373 rij(:) = r_last_update_pbc(atom_b)%r(:) - r_last_update_pbc(atom_a)%r(:) + cell_v
374 drij = dot_product(rij, rij)
376 IF (drij > rab2_max) cycle
378 CALL siepmann_energy(pot_loc, siepmann, r_last_update_pbc, atom_a, atom_b, nloc_size, &
379 glob_loc_list(:, ifirst:ilast), cell_v, cell, drij, &
380 particle_set, nr_oh, nr_h3o, nr_o)
381 pot_manybody = pot_manybody + pot_loc
384 IF (ipair <= npairs) junique = sort_list(1, ipair)
386 DEALLOCATE (sort_list, work_list)
389 END DO kind_group_loop_2
393 print_h3o=.false., print_o=.false.)
395 print_h3o=.true., print_o=.false.)
397 print_h3o=.false., print_o=.true.)
402 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
403 CALL setup_gal_arrays(nonbonded, potparm, glob_loc_list, glob_cell_v, glob_loc_list_a, cell)
404 DO ilist = 1, nonbonded%nlists
405 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
406 npairs = neighbor_kind_pair%npairs
407 IF (npairs == 0) cycle
408 kind_group_loop_3:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
409 istart = neighbor_kind_pair%grp_kind_start(igrp)
410 iend = neighbor_kind_pair%grp_kind_end(igrp)
411 ikind = neighbor_kind_pair%ij_kind(1, igrp)
412 jkind = neighbor_kind_pair%ij_kind(2, igrp)
413 list => neighbor_kind_pair%list
414 cvi = neighbor_kind_pair%cell_vector
415 pot => potparm%pot(ikind, jkind)%pot
416 DO i = 1,
SIZE(pot%type)
418 rab2_max = pot%set(i)%gal%rcutsq
419 cell_v = matmul(cell%hmat, cvi)
420 pot => potparm%pot(ikind, jkind)%pot
421 gal => pot%set(i)%gal
422 npairs = iend - istart + 1
423 IF (npairs /= 0)
THEN
424 ALLOCATE (sort_list(2, npairs), work_list(npairs))
425 sort_list =
list(:, istart:iend)
428 CALL sort(sort_list(1, :), npairs, work_list)
430 work_list(ipair) = sort_list(2, work_list(ipair))
432 sort_list(2, :) = work_list
435 DO ipair = 1, npairs - 1
436 IF (sort_list(1, ipair + 1) /= sort_list(1, ipair)) nunique = nunique + 1
439 junique = sort_list(1, ipair)
441 DO iunique = 1, nunique
443 IF (glob_loc_list_a(ifirst) > atom_a) cycle
444 DO mpair = ifirst,
SIZE(glob_loc_list_a)
445 IF (glob_loc_list_a(mpair) == atom_a)
EXIT
448 DO mpair = ifirst,
SIZE(glob_loc_list_a)
449 IF (glob_loc_list_a(mpair) /= atom_a)
EXIT
453 IF (ifirst /= 0) nloc_size = ilast - ifirst + 1
454 DO WHILE (ipair <= npairs)
455 IF (sort_list(1, ipair) /= junique)
EXIT
456 atom_b = sort_list(2, ipair)
459 rij(:) = r_last_update_pbc(atom_b)%r(:) - r_last_update_pbc(atom_a)%r(:) + cell_v
460 drij = dot_product(rij, rij)
462 IF (drij > rab2_max) cycle
464 CALL gal_energy(pot_loc, gal, r_last_update_pbc, atom_a, atom_b, &
465 cell, particle_set, mm_section)
467 pot_manybody = pot_manybody + pot_loc
470 IF (ipair <= npairs) junique = sort_list(1, ipair)
472 DEALLOCATE (sort_list, work_list)
475 END DO kind_group_loop_3
482 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
483 CALL setup_gal21_arrays(nonbonded, potparm, glob_loc_list, glob_cell_v, glob_loc_list_a, cell)
484 DO ilist = 1, nonbonded%nlists
485 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
486 npairs = neighbor_kind_pair%npairs
487 IF (npairs == 0) cycle
488 kind_group_loop_5:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
489 istart = neighbor_kind_pair%grp_kind_start(igrp)
490 iend = neighbor_kind_pair%grp_kind_end(igrp)
491 ikind = neighbor_kind_pair%ij_kind(1, igrp)
492 jkind = neighbor_kind_pair%ij_kind(2, igrp)
493 list => neighbor_kind_pair%list
494 cvi = neighbor_kind_pair%cell_vector
495 pot => potparm%pot(ikind, jkind)%pot
496 DO i = 1,
SIZE(pot%type)
498 rab2_max = pot%set(i)%gal21%rcutsq
499 cell_v = matmul(cell%hmat, cvi)
500 pot => potparm%pot(ikind, jkind)%pot
501 gal21 => pot%set(i)%gal21
502 npairs = iend - istart + 1
503 IF (npairs /= 0)
THEN
504 ALLOCATE (sort_list(2, npairs), work_list(npairs))
505 sort_list =
list(:, istart:iend)
508 CALL sort(sort_list(1, :), npairs, work_list)
510 work_list(ipair) = sort_list(2, work_list(ipair))
512 sort_list(2, :) = work_list
515 DO ipair = 1, npairs - 1
516 IF (sort_list(1, ipair + 1) /= sort_list(1, ipair)) nunique = nunique + 1
519 junique = sort_list(1, ipair)
521 DO iunique = 1, nunique
523 IF (glob_loc_list_a(ifirst) > atom_a) cycle
524 DO mpair = ifirst,
SIZE(glob_loc_list_a)
525 IF (glob_loc_list_a(mpair) == atom_a)
EXIT
528 DO mpair = ifirst,
SIZE(glob_loc_list_a)
529 IF (glob_loc_list_a(mpair) /= atom_a)
EXIT
533 IF (ifirst /= 0) nloc_size = ilast - ifirst + 1
534 DO WHILE (ipair <= npairs)
535 IF (sort_list(1, ipair) /= junique)
EXIT
536 atom_b = sort_list(2, ipair)
539 rij(:) = r_last_update_pbc(atom_b)%r(:) - r_last_update_pbc(atom_a)%r(:) + cell_v
540 drij = dot_product(rij, rij)
542 IF (drij > rab2_max) cycle
544 CALL gal21_energy(pot_loc, gal21, r_last_update_pbc, atom_a, atom_b, &
545 cell, particle_set, mm_section)
547 pot_manybody = pot_manybody + pot_loc
550 IF (ipair <= npairs) junique = sort_list(1, ipair)
552 DEALLOCATE (sort_list, work_list)
555 END DO kind_group_loop_5
560 CALL timestop(handle)
576 f_nonbond, pv_nonbond, use_virial)
581 REAL(kind=
dp),
DIMENSION(:, :),
INTENT(INOUT) :: f_nonbond, pv_nonbond
582 LOGICAL,
INTENT(IN) :: use_virial
584 CHARACTER(LEN=*),
PARAMETER :: routinen =
'force_nonbond_manybody'
586 INTEGER :: atom_a, atom_b, handle, i, i_a, i_b, iend, ifirst, igrp, ikind, ilast, ilist, &
587 ipair, istart, iunique, jkind, junique, kind_a, kind_b, mpair, nkinds, nloc_size, npairs, &
589 INTEGER,
ALLOCATABLE,
DIMENSION(:, :) :: eam_kinds_index
590 INTEGER,
DIMENSION(:),
POINTER :: glob_loc_list_a, work_list
591 INTEGER,
DIMENSION(:, :),
POINTER :: glob_loc_list,
list, sort_list
592 LOGICAL :: any_ace, any_allegro, any_deepmd, &
593 any_gal, any_gal21, any_mace, &
594 any_nequip, any_siepmann, any_tersoff
595 REAL(kind=
dp) :: f_eam,
fac, fr(3), ptens11, ptens12, ptens13, ptens21, ptens22, ptens23, &
596 ptens31, ptens32, ptens33, rab(3), rab2, rab2_max, rtmp(3)
597 REAL(kind=
dp),
DIMENSION(3) :: cell_v, cvi
598 REAL(kind=
dp),
DIMENSION(:, :),
POINTER :: glob_cell_v
600 TYPE(
eam_type),
DIMENSION(:),
POINTER :: eam_data
607 TYPE(
pos_type),
DIMENSION(:),
POINTER :: r_last_update_pbc
611 any_tersoff = .false.
612 any_allegro = .false.
615 any_siepmann = .false.
620 CALL timeset(routinen, handle)
621 NULLIFY (eam_a, eam_b, tersoff, siepmann, gal, gal21)
624 natom_types=nkinds, eam_data=eam_data, r_last_update_pbc=r_last_update_pbc)
628 ptens11 = 0.0_dp; ptens12 = 0.0_dp; ptens13 = 0.0_dp
629 ptens21 = 0.0_dp; ptens22 = 0.0_dp; ptens23 = 0.0_dp
630 ptens31 = 0.0_dp; ptens32 = 0.0_dp; ptens33 = 0.0_dp
633 nkinds =
SIZE(potparm%pot, 1)
634 ALLOCATE (eam_kinds_index(nkinds, nkinds))
637 DO jkind = ikind, nkinds
638 DO i = 1,
SIZE(potparm%pot(ikind, jkind)%pot%type)
639 IF (potparm%pot(ikind, jkind)%pot%type(i) ==
ea_type)
THEN
641 cpassert(eam_kinds_index(ikind, jkind) == -1)
642 cpassert(eam_kinds_index(jkind, ikind) == -1)
643 eam_kinds_index(ikind, jkind) = i
644 eam_kinds_index(jkind, ikind) = i
650 DO jkind = ikind, nkinds
651 any_ace = any_ace .OR. any(potparm%pot(ikind, jkind)%pot%type ==
ace_type)
660 DO jkind = ikind, nkinds
661 any_deepmd = any_deepmd .OR. any(potparm%pot(ikind, jkind)%pot%type ==
deepmd_type)
671 DO jkind = ikind, nkinds
672 any_nequip = any_nequip .OR. any(potparm%pot(ikind, jkind)%pot%type ==
nequip_type)
681 DO jkind = ikind, nkinds
682 any_allegro = any_allegro .OR. any(potparm%pot(ikind, jkind)%pot%type ==
allegro_type)
685 IF (any_allegro)
THEN
691 DO jkind = ikind, nkinds
692 any_mace = any_mace .OR. any(potparm%pot(ikind, jkind)%pot%type ==
mace_type)
700 DO ilist = 1, nonbonded%nlists
701 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
702 npairs = neighbor_kind_pair%npairs
703 IF (npairs == 0) cycle
704 kind_group_loop1:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
705 istart = neighbor_kind_pair%grp_kind_start(igrp)
706 iend = neighbor_kind_pair%grp_kind_end(igrp)
707 ikind = neighbor_kind_pair%ij_kind(1, igrp)
708 jkind = neighbor_kind_pair%ij_kind(2, igrp)
709 list => neighbor_kind_pair%list
710 cvi = neighbor_kind_pair%cell_vector
711 pot => potparm%pot(ikind, jkind)%pot
712 IF (pot%no_mb) cycle kind_group_loop1
713 rab2_max = pot%rcutsq
714 cell_v = matmul(cell%hmat, cvi)
715 any_tersoff = any_tersoff .OR. any(pot%type ==
tersoff_type)
716 any_siepmann = any_siepmann .OR. any(pot%type ==
siepmann_type)
717 any_ace = any_ace .OR. any(pot%type ==
ace_type)
718 any_deepmd = any_deepmd .OR. any(pot%type ==
deepmd_type)
719 any_gal = any_gal .OR. any(pot%type ==
gal_type)
720 any_gal21 = any_gal21 .OR. any(pot%type ==
gal21_type)
721 any_nequip = any_nequip .OR. any(pot%type ==
nequip_type)
722 any_allegro = any_allegro .OR. any(pot%type ==
allegro_type)
723 i = eam_kinds_index(ikind, jkind)
724 IF (i == -1) cycle kind_group_loop1
726 cpassert(
ASSOCIATED(eam_data))
727 DO ipair = istart, iend
728 atom_a =
list(1, ipair)
729 atom_b =
list(2, ipair)
731 IF (atom_a == atom_b)
fac = 0.5_dp
732 kind_a = particle_set(atom_a)%atomic_kind%kind_number
733 kind_b = particle_set(atom_b)%atomic_kind%kind_number
734 i_a = eam_kinds_index(kind_a, kind_a)
735 i_b = eam_kinds_index(kind_b, kind_b)
736 eam_a => potparm%pot(kind_a, kind_a)%pot%set(i_a)%eam
737 eam_b => potparm%pot(kind_b, kind_b)%pot%set(i_b)%eam
741 rab = r_last_update_pbc(atom_b)%r - r_last_update_pbc(atom_a)%r
743 rab2 = rab(1)*rab(1) + rab(2)*rab(2) + rab(3)*rab(3)
744 IF (rab2 <= rab2_max)
THEN
745 CALL get_force_eam(rab2, eam_a, eam_b, eam_data, atom_a, atom_b, f_eam)
748 fr(1) = -f_eam*rab(1)
749 fr(2) = -f_eam*rab(2)
750 fr(3) = -f_eam*rab(3)
751 f_nonbond(1, atom_a) = f_nonbond(1, atom_a) - fr(1)
752 f_nonbond(2, atom_a) = f_nonbond(2, atom_a) - fr(2)
753 f_nonbond(3, atom_a) = f_nonbond(3, atom_a) - fr(3)
755 f_nonbond(1, atom_b) = f_nonbond(1, atom_b) + fr(1)
756 f_nonbond(2, atom_b) = f_nonbond(2, atom_b) + fr(2)
757 f_nonbond(3, atom_b) = f_nonbond(3, atom_b) + fr(3)
759 ptens11 = ptens11 + rab(1)*fr(1)
760 ptens21 = ptens21 + rab(2)*fr(1)
761 ptens31 = ptens31 + rab(3)*fr(1)
762 ptens12 = ptens12 + rab(1)*fr(2)
763 ptens22 = ptens22 + rab(2)*fr(2)
764 ptens32 = ptens32 + rab(3)*fr(2)
765 ptens13 = ptens13 + rab(1)*fr(3)
766 ptens23 = ptens23 + rab(2)*fr(3)
767 ptens33 = ptens33 + rab(3)*fr(3)
771 END DO kind_group_loop1
773 DEALLOCATE (eam_kinds_index)
776 IF (any_tersoff)
THEN
777 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
778 CALL setup_tersoff_arrays(nonbonded, potparm, glob_loc_list, glob_cell_v, glob_loc_list_a, cell)
779 DO ilist = 1, nonbonded%nlists
780 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
781 npairs = neighbor_kind_pair%npairs
782 IF (npairs == 0) cycle
783 kind_group_loop2:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
784 istart = neighbor_kind_pair%grp_kind_start(igrp)
785 iend = neighbor_kind_pair%grp_kind_end(igrp)
786 ikind = neighbor_kind_pair%ij_kind(1, igrp)
787 jkind = neighbor_kind_pair%ij_kind(2, igrp)
788 list => neighbor_kind_pair%list
789 cvi = neighbor_kind_pair%cell_vector
790 pot => potparm%pot(ikind, jkind)%pot
792 IF (pot%no_mb) cycle kind_group_loop2
793 rab2_max = pot%rcutsq
794 cell_v = matmul(cell%hmat, cvi)
795 DO i = 1,
SIZE(pot%type)
798 npairs = iend - istart + 1
799 tersoff => pot%set(i)%tersoff
800 ALLOCATE (sort_list(2, npairs), work_list(npairs))
801 sort_list =
list(:, istart:iend)
804 CALL sort(sort_list(1, :), npairs, work_list)
806 work_list(ipair) = sort_list(2, work_list(ipair))
808 sort_list(2, :) = work_list
811 DO ipair = 1, npairs - 1
812 IF (sort_list(1, ipair + 1) /= sort_list(1, ipair)) nunique = nunique + 1
815 junique = sort_list(1, ipair)
817 DO iunique = 1, nunique
819 IF (glob_loc_list_a(ifirst) > atom_a) cycle
820 DO mpair = ifirst,
SIZE(glob_loc_list_a)
821 IF (glob_loc_list_a(mpair) == atom_a)
EXIT
824 DO mpair = ifirst,
SIZE(glob_loc_list_a)
825 IF (glob_loc_list_a(mpair) /= atom_a)
EXIT
829 IF (ifirst /= 0) nloc_size = ilast - ifirst + 1
830 DO WHILE (ipair <= npairs)
831 IF (sort_list(1, ipair) /= junique)
EXIT
832 atom_b = sort_list(2, ipair)
834 rtmp = r_last_update_pbc(atom_b)%r(:) - r_last_update_pbc(atom_a)%r(:) + cell_v
836 IF (dot_product(rtmp, rtmp) <= tersoff%rcutsq)
THEN
838 nloc_size, glob_loc_list(:, ifirst:ilast), glob_cell_v(:, ifirst:ilast), &
839 atom_a, atom_b, f_nonbond, pv_nonbond, use_virial, tersoff%rcutsq)
843 IF (ipair <= npairs) junique = sort_list(1, ipair)
845 DEALLOCATE (sort_list, work_list)
848 END DO kind_group_loop2
853 IF (any_siepmann)
THEN
854 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
856 DO ilist = 1, nonbonded%nlists
857 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
858 npairs = neighbor_kind_pair%npairs
859 IF (npairs == 0) cycle
860 kind_group_loop3:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
861 istart = neighbor_kind_pair%grp_kind_start(igrp)
862 iend = neighbor_kind_pair%grp_kind_end(igrp)
863 ikind = neighbor_kind_pair%ij_kind(1, igrp)
864 jkind = neighbor_kind_pair%ij_kind(2, igrp)
865 list => neighbor_kind_pair%list
866 cvi = neighbor_kind_pair%cell_vector
867 pot => potparm%pot(ikind, jkind)%pot
869 IF (pot%no_mb) cycle kind_group_loop3
870 rab2_max = pot%rcutsq
871 cell_v = matmul(cell%hmat, cvi)
872 DO i = 1,
SIZE(pot%type)
875 npairs = iend - istart + 1
876 siepmann => pot%set(i)%siepmann
877 ALLOCATE (sort_list(2, npairs), work_list(npairs))
878 sort_list =
list(:, istart:iend)
881 CALL sort(sort_list(1, :), npairs, work_list)
883 work_list(ipair) = sort_list(2, work_list(ipair))
885 sort_list(2, :) = work_list
888 DO ipair = 1, npairs - 1
889 IF (sort_list(1, ipair + 1) /= sort_list(1, ipair)) nunique = nunique + 1
892 junique = sort_list(1, ipair)
894 DO iunique = 1, nunique
896 IF (glob_loc_list_a(ifirst) > atom_a) cycle
897 DO mpair = ifirst,
SIZE(glob_loc_list_a)
898 IF (glob_loc_list_a(mpair) == atom_a)
EXIT
901 DO mpair = ifirst,
SIZE(glob_loc_list_a)
902 IF (glob_loc_list_a(mpair) /= atom_a)
EXIT
906 IF (ifirst /= 0) nloc_size = ilast - ifirst + 1
907 DO WHILE (ipair <= npairs)
908 IF (sort_list(1, ipair) /= junique)
EXIT
909 atom_b = sort_list(2, ipair)
911 rtmp = r_last_update_pbc(atom_b)%r(:) - r_last_update_pbc(atom_a)%r(:) + cell_v
913 IF (dot_product(rtmp, rtmp) <= siepmann%rcutsq)
THEN
915 atom_a, atom_b, f_nonbond, use_virial, siepmann%rcutsq, &
918 nloc_size, glob_loc_list(:, ifirst:ilast), &
919 atom_a, atom_b, f_nonbond, use_virial, siepmann%rcutsq, &
924 IF (ipair <= npairs) junique = sort_list(1, ipair)
926 DEALLOCATE (sort_list, work_list)
929 END DO kind_group_loop3
936 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
937 CALL setup_gal_arrays(nonbonded, potparm, glob_loc_list, glob_cell_v, glob_loc_list_a, cell)
938 DO ilist = 1, nonbonded%nlists
939 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
940 npairs = neighbor_kind_pair%npairs
941 IF (npairs == 0) cycle
942 kind_group_loop4:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
943 istart = neighbor_kind_pair%grp_kind_start(igrp)
944 iend = neighbor_kind_pair%grp_kind_end(igrp)
945 ikind = neighbor_kind_pair%ij_kind(1, igrp)
946 jkind = neighbor_kind_pair%ij_kind(2, igrp)
947 list => neighbor_kind_pair%list
948 cvi = neighbor_kind_pair%cell_vector
949 pot => potparm%pot(ikind, jkind)%pot
951 IF (pot%no_mb) cycle kind_group_loop4
952 rab2_max = pot%rcutsq
953 cell_v = matmul(cell%hmat, cvi)
954 DO i = 1,
SIZE(pot%type)
957 npairs = iend - istart + 1
958 gal => pot%set(i)%gal
959 ALLOCATE (sort_list(2, npairs), work_list(npairs))
960 sort_list =
list(:, istart:iend)
963 CALL sort(sort_list(1, :), npairs, work_list)
965 work_list(ipair) = sort_list(2, work_list(ipair))
967 sort_list(2, :) = work_list
970 DO ipair = 1, npairs - 1
971 IF (sort_list(1, ipair + 1) /= sort_list(1, ipair)) nunique = nunique + 1
974 junique = sort_list(1, ipair)
976 DO iunique = 1, nunique
978 IF (glob_loc_list_a(ifirst) > atom_a) cycle
979 DO mpair = ifirst,
SIZE(glob_loc_list_a)
980 IF (glob_loc_list_a(mpair) == atom_a)
EXIT
983 DO mpair = ifirst,
SIZE(glob_loc_list_a)
984 IF (glob_loc_list_a(mpair) /= atom_a)
EXIT
988 IF (ifirst /= 0) nloc_size = ilast - ifirst + 1
989 DO WHILE (ipair <= npairs)
990 IF (sort_list(1, ipair) /= junique)
EXIT
991 atom_b = sort_list(2, ipair)
993 rtmp = r_last_update_pbc(atom_b)%r(:) - r_last_update_pbc(atom_a)%r(:) + cell_v
995 IF (dot_product(rtmp, rtmp) <= gal%rcutsq)
THEN
997 atom_a, atom_b, f_nonbond, use_virial, &
1002 IF (ipair <= npairs) junique = sort_list(1, ipair)
1004 DEALLOCATE (sort_list, work_list)
1007 END DO kind_group_loop4
1014 NULLIFY (glob_loc_list, glob_cell_v, glob_loc_list_a)
1015 CALL setup_gal21_arrays(nonbonded, potparm, glob_loc_list, glob_cell_v, glob_loc_list_a, cell)
1016 DO ilist = 1, nonbonded%nlists
1017 neighbor_kind_pair => nonbonded%neighbor_kind_pairs(ilist)
1018 npairs = neighbor_kind_pair%npairs
1019 IF (npairs == 0) cycle
1020 kind_group_loop6:
DO igrp = 1, neighbor_kind_pair%ngrp_kind
1021 istart = neighbor_kind_pair%grp_kind_start(igrp)
1022 iend = neighbor_kind_pair%grp_kind_end(igrp)
1023 ikind = neighbor_kind_pair%ij_kind(1, igrp)
1024 jkind = neighbor_kind_pair%ij_kind(2, igrp)
1025 list => neighbor_kind_pair%list
1026 cvi = neighbor_kind_pair%cell_vector
1027 pot => potparm%pot(ikind, jkind)%pot
1029 IF (pot%no_mb) cycle kind_group_loop6
1030 rab2_max = pot%rcutsq
1031 cell_v = matmul(cell%hmat, cvi)
1032 DO i = 1,
SIZE(pot%type)
1035 npairs = iend - istart + 1
1036 gal21 => pot%set(i)%gal21
1037 ALLOCATE (sort_list(2, npairs), work_list(npairs))
1038 sort_list =
list(:, istart:iend)
1041 CALL sort(sort_list(1, :), npairs, work_list)
1042 DO ipair = 1, npairs
1043 work_list(ipair) = sort_list(2, work_list(ipair))
1045 sort_list(2, :) = work_list
1048 DO ipair = 1, npairs - 1
1049 IF (sort_list(1, ipair + 1) /= sort_list(1, ipair)) nunique = nunique + 1
1052 junique = sort_list(1, ipair)
1054 DO iunique = 1, nunique
1056 IF (glob_loc_list_a(ifirst) > atom_a) cycle
1057 DO mpair = ifirst,
SIZE(glob_loc_list_a)
1058 IF (glob_loc_list_a(mpair) == atom_a)
EXIT
1061 DO mpair = ifirst,
SIZE(glob_loc_list_a)
1062 IF (glob_loc_list_a(mpair) /= atom_a)
EXIT
1066 IF (ifirst /= 0) nloc_size = ilast - ifirst + 1
1067 DO WHILE (ipair <= npairs)
1068 IF (sort_list(1, ipair) /= junique)
EXIT
1069 atom_b = sort_list(2, ipair)
1071 rtmp = r_last_update_pbc(atom_b)%r(:) - r_last_update_pbc(atom_a)%r(:) + cell_v
1073 IF (dot_product(rtmp, rtmp) <= gal21%rcutsq)
THEN
1075 atom_a, atom_b, f_nonbond, pv_nonbond, use_virial, &
1080 IF (ipair <= npairs) junique = sort_list(1, ipair)
1082 DEALLOCATE (sort_list, work_list)
1085 END DO kind_group_loop6
1090 IF (use_virial)
THEN
1091 pv_nonbond(1, 1) = pv_nonbond(1, 1) + ptens11
1092 pv_nonbond(1, 2) = pv_nonbond(1, 2) + ptens12
1093 pv_nonbond(1, 3) = pv_nonbond(1, 3) + ptens13
1094 pv_nonbond(2, 1) = pv_nonbond(2, 1) + ptens21
1095 pv_nonbond(2, 2) = pv_nonbond(2, 2) + ptens22
1096 pv_nonbond(2, 3) = pv_nonbond(2, 3) + ptens23
1097 pv_nonbond(3, 1) = pv_nonbond(3, 1) + ptens31
1098 pv_nonbond(3, 2) = pv_nonbond(3, 2) + ptens32
1099 pv_nonbond(3, 3) = pv_nonbond(3, 3) + ptens33
1101 CALL timestop(handle)