(git:ed6f26b)
Loading...
Searching...
No Matches
metadynamics_utils.F
Go to the documentation of this file.
1!--------------------------------------------------------------------------------------------------!
2! CP2K: A general program to perform molecular dynamics simulations !
3! Copyright 2000-2025 CP2K developers group <https://cp2k.org> !
4! !
5! SPDX-License-Identifier: GPL-2.0-or-later !
6!--------------------------------------------------------------------------------------------------!
7
8! **************************************************************************************************
9!> \brief Performs the metadynamics calculation
10!> \par History
11!> 01.2005 created [fawzi and ale]
12!> 11.2007 Teodoro Laino [tlaino] - University of Zurich
13! **************************************************************************************************
14MODULE metadynamics_utils
15 USE cp_files, ONLY: close_file,&
16 open_file
17 USE cp_log_handling, ONLY: cp_get_default_logger,&
18 cp_logger_type,&
19 cp_to_string
20 USE cp_output_handling, ONLY: cp_print_key_finished_output,&
21 cp_print_key_unit_nr
22 USE cp_subsys_types, ONLY: cp_subsys_type
23 USE force_env_types, ONLY: force_env_get,&
24 force_env_type
25 USE input_constants, ONLY: do_fe_meta,&
26 do_wall_gaussian,&
27 do_wall_m,&
28 do_wall_none,&
29 do_wall_p,&
30 do_wall_quadratic,&
31 do_wall_quartic,&
32 do_wall_reflective
33 USE input_cp2k_free_energy, ONLY: create_metavar_section
34 USE input_enumeration_types, ONLY: enum_i2c,&
35 enumeration_type
36 USE input_keyword_types, ONLY: keyword_get,&
37 keyword_type
38 USE input_section_types, ONLY: section_get_keyword,&
39 section_get_subsection,&
40 section_release,&
41 section_type,&
42 section_vals_get,&
43 section_vals_get_subs_vals,&
44 section_vals_type,&
45 section_vals_val_get
46 USE kinds, ONLY: default_path_length,&
47 dp
48 USE machine, ONLY: m_mov
49 USE message_passing, ONLY: mp_para_env_type
50 USE metadynamics_types, ONLY: hills_env_type,&
51 meta_env_type,&
52 metadyn_create,&
53 metavar_type,&
54 multiple_walkers_type
55 USE physcon, ONLY: kelvin
56#include "./base/base_uses.f90"
57
58 IMPLICIT NONE
59 PRIVATE
60
61 CHARACTER(len=*), PARAMETER, PRIVATE :: moduleN = 'metadynamics_utils'
62
63 PUBLIC :: metadyn_read, &
64 synchronize_multiple_walkers, &
65 add_hill_single, &
66 restart_hills, &
67 get_meta_iter_level, &
68 meta_walls
69
70CONTAINS
71
72! **************************************************************************************************
73!> \brief reads metadynamics section
74!> \param meta_env ...
75!> \param force_env ...
76!> \param root_section ...
77!> \param para_env ...
78!> \param fe_section ...
79!> \par History
80!> 04.2004 created
81!> \author Teodoro Laino [tlaino] - University of Zurich. 11.2007
82! **************************************************************************************************
83 SUBROUTINE metadyn_read(meta_env, force_env, root_section, para_env, fe_section)
84 TYPE(meta_env_type), POINTER :: meta_env
85 TYPE(force_env_type), POINTER :: force_env
86 TYPE(section_vals_type), POINTER :: root_section
87 TYPE(mp_para_env_type), POINTER :: para_env
88 TYPE(section_vals_type), OPTIONAL, POINTER :: fe_section
89
90 CHARACTER(len=*), PARAMETER :: routinen = 'metadyn_read'
91
92 CHARACTER(LEN=default_path_length) :: walkers_file_name
93 INTEGER :: handle, i, id_method, n_colvar, n_rep, &
94 number_allocated_colvars
95 INTEGER, DIMENSION(:), POINTER :: walkers_status
96 LOGICAL :: check, explicit
97 REAL(kind=dp) :: dt
98 TYPE(cp_subsys_type), POINTER :: subsys
99 TYPE(section_vals_type), POINTER :: md_section, metadyn_section, &
100 metavar_section, walkers_section
101
102 NULLIFY (subsys)
103 CALL timeset(routinen, handle)
104
105 CALL section_vals_get(fe_section, explicit=explicit)
106 IF (explicit) THEN
107 number_allocated_colvars = 0
108 CALL force_env_get(force_env, subsys=subsys)
109 IF (ASSOCIATED(subsys%colvar_p)) THEN
110 number_allocated_colvars = SIZE(subsys%colvar_p)
111 END IF
112 CALL section_vals_val_get(fe_section, "METHOD", i_val=id_method)
113 IF (id_method /= do_fe_meta) THEN
114 CALL timestop(handle)
115 RETURN
116 END IF
117 metadyn_section => section_vals_get_subs_vals(fe_section, "METADYN")
118 cpassert(.NOT. ASSOCIATED(meta_env))
119
120 md_section => section_vals_get_subs_vals(root_section, "MOTION%MD")
121 CALL section_vals_val_get(md_section, "TIMESTEP", r_val=dt)
122
123 metavar_section => section_vals_get_subs_vals(metadyn_section, "METAVAR")
124 CALL section_vals_get(metavar_section, n_repetition=n_colvar)
125 ALLOCATE (meta_env)
126 CALL metadyn_create(meta_env, n_colvar=n_colvar, &
127 dt=dt, para_env=para_env, metadyn_section=metadyn_section)
128
129 !Check if using plumed. If so, only get the file name and read nothing else
130 CALL section_vals_val_get(metadyn_section, "USE_PLUMED", l_val=meta_env%use_plumed)
131 IF (meta_env%use_plumed .EQV. .true.) THEN
132 CALL section_vals_val_get(metadyn_section, "PLUMED_INPUT_FILE", c_val=meta_env%plumed_input_file)
133 meta_env%plumed_input_file = trim(meta_env%plumed_input_file)//char(0)
134 meta_env%langevin = .false.
135 CALL timestop(handle)
136 RETURN
137 END IF
138
139 CALL section_vals_val_get(metadyn_section, "DO_HILLS", l_val=meta_env%do_hills)
140 CALL section_vals_val_get(metadyn_section, "LAGRANGE", l_val=meta_env%extended_lagrange)
141 CALL section_vals_val_get(metadyn_section, "TAMCSteps", i_val=meta_env%TAMCSteps)
142 IF (meta_env%TAMCSteps < 0) THEN
143 cpabort("TAMCSteps must be positive!")
144 END IF
145 CALL section_vals_val_get(metadyn_section, "Timestep", r_val=meta_env%zdt)
146 IF (meta_env%zdt <= 0.0_dp) THEN
147 cpabort("Timestep must be positive!")
148 END IF
149 CALL section_vals_val_get(metadyn_section, "WW", r_val=meta_env%hills_env%ww)
150 CALL section_vals_val_get(metadyn_section, "NT_HILLS", i_val=meta_env%hills_env%nt_hills)
151 CALL section_vals_val_get(metadyn_section, "MIN_NT_HILLS", i_val=meta_env%hills_env%min_nt_hills)
152 IF (meta_env%hills_env%nt_hills <= 0) THEN
153 meta_env%hills_env%min_nt_hills = meta_env%hills_env%nt_hills
154 CALL cp_warn(__location__, &
155 "NT_HILLS has a value <= 0; "// &
156 "Setting MIN_NT_HILLS to the same value! "// &
157 "Overriding input specification!")
158 END IF
159 check = meta_env%hills_env%nt_hills >= meta_env%hills_env%min_nt_hills
160 IF (.NOT. check) &
161 CALL cp_abort(__location__, "MIN_NT_HILLS must have a value smaller or equal to NT_HILLS! "// &
162 "Cross check with the input reference!")
163 !RG Adaptive hills
164 CALL section_vals_val_get(metadyn_section, "MIN_DISP", r_val=meta_env%hills_env%min_disp)
165 CALL section_vals_val_get(metadyn_section, "OLD_HILL_NUMBER", i_val=meta_env%hills_env%old_hill_number)
166 CALL section_vals_val_get(metadyn_section, "OLD_HILL_STEP", i_val=meta_env%hills_env%old_hill_step)
167
168 !Hills tail damping
169 CALL section_vals_val_get(metadyn_section, "HILL_TAIL_CUTOFF", r_val=meta_env%hills_env%tail_cutoff)
170 CALL section_vals_val_get(metadyn_section, "P_EXPONENT", i_val=meta_env%hills_env%p_exp)
171 CALL section_vals_val_get(metadyn_section, "Q_EXPONENT", i_val=meta_env%hills_env%q_exp)
172
173 CALL section_vals_val_get(metadyn_section, "SLOW_GROWTH", l_val=meta_env%hills_env%slow_growth)
174
175 !RG Adaptive hills
176 CALL section_vals_val_get(metadyn_section, "STEP_START_VAL", i_val=meta_env%n_steps)
177 cpassert(meta_env%n_steps >= 0)
178 CALL section_vals_val_get(metadyn_section, "NHILLS_START_VAL", &
179 i_val=meta_env%hills_env%n_hills)
180 CALL section_vals_val_get(metadyn_section, "TEMPERATURE", r_val=meta_env%temp_wanted)
181 CALL section_vals_val_get(metadyn_section, "LANGEVIN", l_val=meta_env%langevin)
182 CALL section_vals_val_get(metadyn_section, "TEMP_TOL", explicit=meta_env%tempcontrol, &
183 r_val=meta_env%toll_temp)
184 CALL section_vals_val_get(metadyn_section, "WELL_TEMPERED", l_val=meta_env%well_tempered)
185 CALL section_vals_val_get(metadyn_section, "DELTA_T", explicit=meta_env%hills_env%wtcontrol, &
186 r_val=meta_env%delta_t)
187 CALL section_vals_val_get(metadyn_section, "WTGAMMA", explicit=check, &
188 r_val=meta_env%wtgamma)
189 IF (meta_env%well_tempered) THEN
190 meta_env%hills_env%wtcontrol = meta_env%hills_env%wtcontrol .OR. check
191 check = meta_env%hills_env%wtcontrol
192 IF (.NOT. check) &
193 CALL cp_abort(__location__, "When using Well-Tempered metadynamics, "// &
194 "DELTA_T (or WTGAMMA) should be explicitly specified.")
195 IF (meta_env%extended_lagrange) &
196 CALL cp_abort(__location__, &
197 "Well-Tempered metadynamics not possible with extended-lagrangian formulation.")
198 IF (meta_env%hills_env%min_disp > 0.0_dp) &
199 CALL cp_abort(__location__, &
200 "Well-Tempered metadynamics not possible with Adaptive hills.")
201 END IF
202
203 CALL section_vals_val_get(metadyn_section, "COLVAR_AVG_TEMPERATURE_RESTART", &
204 r_val=meta_env%avg_temp)
205 ! Parsing Metavar Section
206 DO i = 1, n_colvar
207 CALL metavar_read(meta_env%metavar(i), meta_env%extended_lagrange, &
208 meta_env%langevin, i, metavar_section)
209 check = (meta_env%metavar(i)%icolvar <= number_allocated_colvars)
210 IF (.NOT. check) &
211 CALL cp_abort(__location__, &
212 "An error occurred in the specification of COLVAR for METAVAR. "// &
213 "Specified COLVAR #("//trim(adjustl(cp_to_string(meta_env%metavar(i)%icolvar)))//") "// &
214 "is larger than the maximum number of COLVARS defined in the SUBSYS ("// &
215 trim(adjustl(cp_to_string(number_allocated_colvars)))//") !")
216 END DO
217
218 ! Parsing the Multiple Walkers Info
219 IF (meta_env%do_multiple_walkers) THEN
220 NULLIFY (walkers_status)
221 walkers_section => section_vals_get_subs_vals(metadyn_section, "MULTIPLE_WALKERS")
222
223 ! General setup for walkers
224 CALL section_vals_val_get(walkers_section, "WALKER_ID", &
225 i_val=meta_env%multiple_walkers%walker_id)
226 CALL section_vals_val_get(walkers_section, "NUMBER_OF_WALKERS", &
227 i_val=meta_env%multiple_walkers%walkers_tot_nr)
228 CALL section_vals_val_get(walkers_section, "WALKER_COMM_FREQUENCY", &
229 i_val=meta_env%multiple_walkers%walkers_freq_comm)
230
231 ! Handle status and file names
232 ALLOCATE (meta_env%multiple_walkers%walkers_status(meta_env%multiple_walkers%walkers_tot_nr))
233 ALLOCATE (meta_env%multiple_walkers%walkers_file_name(meta_env%multiple_walkers%walkers_tot_nr))
234 CALL section_vals_val_get(walkers_section, "WALKERS_STATUS", explicit=explicit)
235 IF (explicit) THEN
236 CALL section_vals_val_get(walkers_section, "WALKERS_STATUS", i_vals=walkers_status)
237 check = (SIZE(walkers_status) == meta_env%multiple_walkers%walkers_tot_nr)
238 IF (.NOT. check) &
239 CALL cp_abort(__location__, &
240 "Number of Walkers specified in the input does not match with the "// &
241 "size of the WALKERS_STATUS. Please check your input and in case "// &
242 "this is a restart run consider the possibility to switch off the "// &
243 "RESTART_WALKERS in the EXT_RESTART section! ")
244 meta_env%multiple_walkers%walkers_status = walkers_status
245 ELSE
246 meta_env%multiple_walkers%walkers_status = 0
247 END IF
248 meta_env%multiple_walkers%n_hills_local = &
249 meta_env%multiple_walkers%walkers_status(meta_env%multiple_walkers%walker_id)
250
251 CALL section_vals_val_get(walkers_section, "WALKERS_FILE_NAME%_DEFAULT_KEYWORD_", &
252 n_rep_val=n_rep)
253 check = (n_rep == meta_env%multiple_walkers%walkers_tot_nr)
254 IF (.NOT. check) &
255 CALL cp_abort(__location__, &
256 "Number of Walkers specified in the input does not match with the "// &
257 "number of Walkers File names provided. Please check your input and in case "// &
258 "this is a restart run consider the possibility to switch off the "// &
259 "RESTART_WALKERS in the EXT_RESTART section! ")
260 DO i = 1, n_rep
261 CALL section_vals_val_get(walkers_section, "WALKERS_FILE_NAME%_DEFAULT_KEYWORD_", &
262 i_rep_val=i, c_val=walkers_file_name)
263 meta_env%multiple_walkers%walkers_file_name(i) = walkers_file_name
264 END DO
265 END IF
266
267 ! Print Metadynamics Info
268 CALL print_metadyn_info(meta_env, n_colvar, metadyn_section)
269 END IF
270
271 CALL timestop(handle)
272
273 END SUBROUTINE metadyn_read
274
275! **************************************************************************************************
276!> \brief prints information on the metadynamics run
277!> \param meta_env ...
278!> \param n_colvar ...
279!> \param metadyn_section ...
280!> \author Teodoro Laino [tlaino] - University of Zurich. 10.2008
281! **************************************************************************************************
282 SUBROUTINE print_metadyn_info(meta_env, n_colvar, metadyn_section)
283 TYPE(meta_env_type), POINTER :: meta_env
284 INTEGER, INTENT(IN) :: n_colvar
285 TYPE(section_vals_type), POINTER :: metadyn_section
286
287 CHARACTER(len=*), PARAMETER :: routinen = 'print_metadyn_info'
288
289 CHARACTER(LEN=10) :: my_id, my_tag
290 INTEGER :: handle, i, iw, j
291 TYPE(cp_logger_type), POINTER :: logger
292 TYPE(enumeration_type), POINTER :: enum
293 TYPE(keyword_type), POINTER :: keyword
294 TYPE(section_type), POINTER :: section, wall_section, work_section
295
296 CALL timeset(routinen, handle)
297
298 logger => cp_get_default_logger()
299 iw = cp_print_key_unit_nr(logger, metadyn_section, &
300 "PRINT%PROGRAM_RUN_INFO", extension=".metadynLog")
301 NULLIFY (section, enum, keyword)
302 CALL create_metavar_section(section)
303 wall_section => section_get_subsection(section, "WALL")
304 IF (iw > 0) THEN
305 WRITE (iw, '( /A )') ' METADYN| Meta Dynamics Protocol '
306 WRITE (iw, '( A,T71,I10)') ' METADYN| Number of interval time steps to spawn hills', &
307 meta_env%hills_env%nt_hills
308 WRITE (iw, '( A,T71,I10)') ' METADYN| Number of previously spawned hills', &
309 meta_env%hills_env%n_hills
310 IF (meta_env%extended_lagrange) THEN
311 WRITE (iw, '( A )') ' METADYN| Extended Lagrangian Scheme '
312 IF (meta_env%tempcontrol) WRITE (iw, '( A,T71,F10.2)') &
313 ' METADYN| Collective Variables Temperature control', meta_env%toll_temp
314 IF (meta_env%langevin) THEN
315 WRITE (iw, '(A,T71)') ' METADYN| Langevin Thermostat in use for COLVAR '
316 WRITE (iw, '(A,T71,F10.4)') ' METADYN| Langevin Thermostat. Target Temperature = ', &
317 meta_env%temp_wanted*kelvin
318 END IF
319 WRITE (iw, '(A,T71,F10.4)') ' METADYN| COLVARS restarted average temperature ', &
320 meta_env%avg_temp
321 END IF
322 IF (meta_env%do_hills) THEN
323 WRITE (iw, '( A )') ' METADYN| Spawning the Hills '
324 WRITE (iw, '( A,T71,F10.3)') ' METADYN| Height of the Spawned Gaussian', meta_env%hills_env%ww
325 !RG Adaptive hills
326 IF (meta_env%hills_env%min_disp .GT. 0.0_dp) THEN
327 WRITE (iw, '(A)') ' METADYN| Adapative meta time step is activated'
328 WRITE (iw, '(A,T71,F10.4)') ' METADYN| Minimum displacement for next hill', &
329 meta_env%hills_env%min_disp
330 END IF
331 !RG Adaptive hills
332 END IF
333
334 IF (meta_env%well_tempered) THEN
335 WRITE (iw, '( A )') ' METADYN| Well-Tempered metadynamics '
336 IF (meta_env%delta_t > epsilon(1._dp)) THEN
337 WRITE (iw, '( A,T71,F10.3)') ' METADYN| Temperature parameter (Delta T) [K]', meta_env%delta_t*kelvin
338 ELSE
339 WRITE (iw, '( A,T71,F10.3)') ' METADYN| Temperature parameter (gamma)', meta_env%wtgamma
340 END IF
341 END IF
342
343 IF (meta_env%do_multiple_walkers) THEN
344 WRITE (iw, '( A,T71,A10)') ' METADYN| Multiple Walkers', ' ENABLED'
345 WRITE (iw, '( A,T71,I10)') ' METADYN| Number of Multiple Walkers', &
346 meta_env%multiple_walkers%walkers_tot_nr
347 WRITE (iw, '( A,T71,I10)') ' METADYN| Local Walker ID', &
348 meta_env%multiple_walkers%walker_id
349 WRITE (iw, '( A,T71,I10)') ' METADYN| Walker Communication Frequency', &
350 meta_env%multiple_walkers%walkers_freq_comm
351 DO i = 1, meta_env%multiple_walkers%walkers_tot_nr
352 my_tag = ""
353 IF (i == meta_env%multiple_walkers%walker_id) my_tag = " ( Local )"
354 my_id = '( '//trim(adjustl(cp_to_string(i)))//' )'
355 WRITE (iw, '(/,A,T71,A10)') ' WALKERS| Walker ID'//trim(my_tag), adjustr(my_id)
356 WRITE (iw, '( A,T71,I10)') ' WALKERS| Number of Hills communicated', &
357 meta_env%multiple_walkers%walkers_status(i)
358 WRITE (iw, '( A,T24,A57)') ' WALKERS| Base Filename', &
359 adjustr(meta_env%multiple_walkers%walkers_file_name(i) (1:57))
360 END DO
361 WRITE (iw, '(/)')
362 END IF
363
364 WRITE (iw, '( A,T71,I10)') ' METADYN| Number of collective variables', meta_env%n_colvar
365 DO i = 1, n_colvar
366 WRITE (iw, '( A )') ' '//'----------------------------------------------------------------------'
367 WRITE (iw, '( A,T71,I10)') ' METAVARS| Collective Variable Number', meta_env%metavar(i)%icolvar
368 IF (meta_env%extended_lagrange) THEN
369 WRITE (iw, '( A,T71,F10.6)') ' METAVARS| Lambda Parameter', meta_env%metavar(i)%lambda
370 WRITE (iw, '( A,T66,F15.6)') ' METAVARS| Collective Variable Mass', meta_env%metavar(i)%mass
371 END IF
372 WRITE (iw, '( A,T71,F10.6)') ' METAVARS| Scaling factor', meta_env%metavar(i)%delta_s
373 IF (meta_env%langevin) WRITE (iw, '( A,T71,F10.6)') ' METAVARS| Friction for Langevin Thermostat', &
374 meta_env%metavar(i)%gamma
375 IF (meta_env%metavar(i)%do_wall) THEN
376 WRITE (iw, '( A,T71,I10)') ' METAVARS| Number of Walls present', SIZE(meta_env%metavar(i)%walls)
377 DO j = 1, SIZE(meta_env%metavar(i)%walls)
378 keyword => section_get_keyword(wall_section, "TYPE")
379 CALL keyword_get(keyword, enum=enum)
380 WRITE (iw, '(/,A,5X,I10,T50,A,T70,A11)') ' METAVARS| Wall Number:', j, 'Type of Wall:', &
381 adjustr(trim(enum_i2c(enum, meta_env%metavar(i)%walls(j)%id_type)))
382 ! Type of wall IO
383 SELECT CASE (meta_env%metavar(i)%walls(j)%id_type)
384 CASE (do_wall_none)
385 ! Do Nothing
386 cycle
387 CASE (do_wall_reflective)
388 work_section => section_get_subsection(wall_section, "REFLECTIVE")
389 keyword => section_get_keyword(work_section, "DIRECTION")
390 CALL keyword_get(keyword, enum=enum)
391 WRITE (iw, '(A,T70,A11)') ' METAVARS| Wall direction', &
392 adjustr(trim(enum_i2c(enum, meta_env%metavar(i)%walls(j)%id_direction)))
393 CASE (do_wall_quadratic)
394 work_section => section_get_subsection(wall_section, "QUADRATIC")
395 keyword => section_get_keyword(work_section, "DIRECTION")
396 CALL keyword_get(keyword, enum=enum)
397 WRITE (iw, '(A,T70,A11)') ' METAVARS| Wall direction', &
398 adjustr(trim(enum_i2c(enum, meta_env%metavar(i)%walls(j)%id_direction)))
399 WRITE (iw, '(A,T70,F11.6)') ' METAVARS| Constant K of the quadratic potential', &
400 meta_env%metavar(i)%walls(j)%k_quadratic
401 CASE (do_wall_gaussian)
402 WRITE (iw, '(A,T70,F11.6)') ' METAVARS| Height of the Wall Gaussian', &
403 meta_env%metavar(i)%walls(j)%ww_gauss
404 WRITE (iw, '(A,T70,F11.6)') ' METAVARS| Scale of the Wall Gaussian', &
405 meta_env%metavar(i)%walls(j)%sigma_gauss
406 END SELECT
407 WRITE (iw, '(A,T70,F11.6)') ' METAVARS| Wall location', &
408 meta_env%metavar(i)%walls(j)%pos
409 END DO
410 END IF
411 WRITE (iw, '( A )') ' '//'----------------------------------------------------------------------'
412 END DO
413 END IF
414 CALL section_release(section)
415 CALL cp_print_key_finished_output(iw, logger, metadyn_section, "PRINT%PROGRAM_RUN_INFO")
416
417 CALL timestop(handle)
418
419 END SUBROUTINE print_metadyn_info
420
421! **************************************************************************************************
422!> \brief reads metavar section
423!> \param metavar ...
424!> \param extended_lagrange ...
425!> \param langevin ...
426!> \param icol ...
427!> \param metavar_section ...
428!> \par History
429!> 04.2004 created
430!> \author alessandro laio and fawzi mohamed
431!> Teodoro Laino [tlaino] - University of Zurich. 11.2007
432! **************************************************************************************************
433 SUBROUTINE metavar_read(metavar, extended_lagrange, langevin, icol, metavar_section)
434 TYPE(metavar_type), INTENT(INOUT) :: metavar
435 LOGICAL, INTENT(IN) :: extended_lagrange, langevin
436 INTEGER, INTENT(IN) :: icol
437 TYPE(section_vals_type), OPTIONAL, POINTER :: metavar_section
438
439 CHARACTER(len=*), PARAMETER :: routinen = 'metavar_read'
440
441 INTEGER :: handle, i, n_walls
442 TYPE(section_vals_type), POINTER :: wall_section, work_section
443
444 CALL timeset(routinen, handle)
445
446 CALL section_vals_val_get(metavar_section, "COLVAR", i_rep_section=icol, i_val=metavar%icolvar)
447 CALL section_vals_val_get(metavar_section, "SCALE", i_rep_section=icol, r_val=metavar%delta_s)
448 ! Walls
449 wall_section => section_vals_get_subs_vals(metavar_section, "WALL", i_rep_section=icol)
450 CALL section_vals_get(wall_section, n_repetition=n_walls)
451 IF (n_walls /= 0) THEN
452 metavar%do_wall = .true.
453 ALLOCATE (metavar%walls(n_walls))
454 DO i = 1, n_walls
455 CALL section_vals_val_get(wall_section, "TYPE", i_rep_section=i, i_val=metavar%walls(i)%id_type)
456 CALL section_vals_val_get(wall_section, "POSITION", i_rep_section=i, r_val=metavar%walls(i)%pos)
457 SELECT CASE (metavar%walls(i)%id_type)
458 CASE (do_wall_none)
459 ! Just cycle..
460 cycle
461 CASE (do_wall_reflective)
462 work_section => section_vals_get_subs_vals(wall_section, "REFLECTIVE", i_rep_section=i)
463 CALL section_vals_val_get(work_section, "DIRECTION", i_val=metavar%walls(i)%id_direction)
464 CASE (do_wall_quadratic)
465 work_section => section_vals_get_subs_vals(wall_section, "QUADRATIC", i_rep_section=i)
466 CALL section_vals_val_get(work_section, "DIRECTION", i_val=metavar%walls(i)%id_direction)
467 CALL section_vals_val_get(work_section, "K", r_val=metavar%walls(i)%k_quadratic)
468 CASE (do_wall_quartic)
469 work_section => section_vals_get_subs_vals(wall_section, "QUARTIC", i_rep_section=i)
470 CALL section_vals_val_get(work_section, "DIRECTION", i_val=metavar%walls(i)%id_direction)
471 CALL section_vals_val_get(work_section, "K", r_val=metavar%walls(i)%k_quartic)
472 SELECT CASE (metavar%walls(i)%id_direction)
473 CASE (do_wall_m)
474 metavar%walls(i)%pos0 = metavar%walls(i)%pos + (0.05_dp/metavar%walls(i)%k_quartic**(0.25_dp))
475 CASE (do_wall_p)
476 metavar%walls(i)%pos0 = metavar%walls(i)%pos - (0.05_dp/metavar%walls(i)%k_quartic**(0.25_dp))
477 END SELECT
478 CASE (do_wall_gaussian)
479 work_section => section_vals_get_subs_vals(wall_section, "GAUSSIAN", i_rep_section=i)
480 CALL section_vals_val_get(work_section, "WW", r_val=metavar%walls(i)%ww_gauss)
481 CALL section_vals_val_get(work_section, "SIGMA", r_val=metavar%walls(i)%sigma_gauss)
482 END SELECT
483 END DO
484 END IF
485 ! Setup few more parameters for extended lagrangian
486 IF (extended_lagrange) THEN
487 CALL section_vals_val_get(metavar_section, "MASS", i_rep_section=icol, r_val=metavar%mass)
488 CALL section_vals_val_get(metavar_section, "LAMBDA", i_rep_section=icol, r_val=metavar%lambda)
489 IF (langevin) THEN
490 CALL section_vals_val_get(metavar_section, "GAMMA", i_rep_section=icol, r_val=metavar%gamma)
491 END IF
492 END IF
493
494 CALL timestop(handle)
495
496 END SUBROUTINE metavar_read
497
498! **************************************************************************************************
499!> \brief Synchronize with the rest of the walkers
500!> \param multiple_walkers ...
501!> \param hills_env ...
502!> \param colvars ...
503!> \param n_colvar ...
504!> \param metadyn_section ...
505!> \author Teodoro Laino [tlaino] - University of Zurich - 10.2008
506! **************************************************************************************************
507 SUBROUTINE synchronize_multiple_walkers(multiple_walkers, hills_env, colvars, &
508 n_colvar, metadyn_section)
509 TYPE(multiple_walkers_type), POINTER :: multiple_walkers
510 TYPE(hills_env_type), POINTER :: hills_env
511 TYPE(metavar_type), DIMENSION(:), POINTER :: colvars
512 INTEGER, INTENT(IN) :: n_colvar
513 TYPE(section_vals_type), POINTER :: metadyn_section
514
515 CHARACTER(len=*), PARAMETER :: routinen = 'synchronize_multiple_walkers'
516
517 CHARACTER(LEN=default_path_length) :: filename, tmpname
518 INTEGER :: delta_hills, handle, i, i_hills, ih, iw, &
519 unit_nr
520 LOGICAL :: exist
521 REAL(kind=dp) :: invdt, ww
522 REAL(kind=dp), ALLOCATABLE, DIMENSION(:) :: delta_s_save, ss0_save
523 REAL(kind=dp), ALLOCATABLE, DIMENSION(:, :) :: delta_s_ss0_buf
524 TYPE(cp_logger_type), POINTER :: logger
525 TYPE(mp_para_env_type), POINTER :: para_env
526
527 CALL timeset(routinen, handle)
528
529 logger => cp_get_default_logger()
530 para_env => logger%para_env
531
532 ! Locally dump information on file..
533 IF (para_env%is_source()) THEN
534 ! Generate file name for the specific Hill
535 i = multiple_walkers%walker_id
536 filename = trim(multiple_walkers%walkers_file_name(i))//"_"// &
537 trim(adjustl(cp_to_string(multiple_walkers%n_hills_local)))
538 tmpname = trim(filename)//".tmp"
539 CALL open_file(file_name=tmpname, file_status="UNKNOWN", &
540 file_form="FORMATTED", file_action="WRITE", &
541 file_position="APPEND", unit_number=unit_nr)
542 WRITE (unit_nr, *) hills_env%ww_history(hills_env%n_hills)
543 DO ih = 1, n_colvar
544 WRITE (unit_nr, *) hills_env%ss_history(ih, hills_env%n_hills)
545 WRITE (unit_nr, *) hills_env%delta_s_history(ih, hills_env%n_hills)
546 END DO
547 IF (hills_env%wtcontrol) WRITE (unit_nr, *) hills_env%invdt_history(hills_env%n_hills)
548 CALL close_file(unit_nr)
549 CALL m_mov(tmpname, filename)
550 END IF
551
552 IF (modulo(multiple_walkers%n_hills_local, multiple_walkers%walkers_freq_comm) == 0) THEN
553 ! Store colvars information
554 ALLOCATE (ss0_save(n_colvar))
555 ALLOCATE (delta_s_save(n_colvar))
556 ALLOCATE (delta_s_ss0_buf(2, 0:n_colvar))
557 delta_s_ss0_buf = 0
558 DO i = 1, n_colvar
559 ss0_save(i) = colvars(i)%ss0
560 delta_s_save(i) = colvars(i)%delta_s
561 END DO
562
563 ! Watch for other walkers's file and update
564 DO i = 1, multiple_walkers%walkers_tot_nr
565 IF (i == multiple_walkers%walker_id) THEN
566 ! Update local counter
567 multiple_walkers%walkers_status(i) = multiple_walkers%n_hills_local
568 cycle
569 END IF
570
571 i_hills = multiple_walkers%walkers_status(i) + 1
572 filename = trim(multiple_walkers%walkers_file_name(i))//"_"// &
573 trim(adjustl(cp_to_string(i_hills)))
574
575 IF (para_env%is_source()) THEN
576 INQUIRE (file=trim(filename), exist=exist)
577 END IF
578 CALL para_env%bcast(exist)
579 DO WHILE (exist)
580 ! Read information from the walker's file
581 ! We shouldn't care too much about the concurrency of these I/O instructions..
582 ! In case, they can be fixed in the future..
583 IF (para_env%is_source()) THEN
584 CALL open_file(file_name=filename, file_status="OLD", &
585 file_form="FORMATTED", file_action="READ", &
586 file_position="REWIND", unit_number=unit_nr)
587 READ (unit_nr, *) delta_s_ss0_buf(1, 0)
588 DO ih = 1, n_colvar
589 READ (unit_nr, *) delta_s_ss0_buf(1, ih)
590 READ (unit_nr, *) delta_s_ss0_buf(2, ih)
591 END DO
592 IF (hills_env%wtcontrol) READ (unit_nr, *) delta_s_ss0_buf(2, 0)
593 CALL close_file(unit_nr)
594 END IF
595 CALL para_env%bcast(delta_s_ss0_buf)
596 ww = delta_s_ss0_buf(1, 0)
597 IF (hills_env%wtcontrol) invdt = delta_s_ss0_buf(2, 0)
598 DO ih = 1, n_colvar
599 colvars(ih)%ss0 = delta_s_ss0_buf(1, ih)
600 colvars(ih)%delta_s = delta_s_ss0_buf(2, ih)
601 END DO
602
603 ! Add this hill to the history dependent terms
604 IF (hills_env%wtcontrol) THEN
605 CALL add_hill_single(hills_env, colvars, ww, hills_env%n_hills, n_colvar, invdt=invdt)
606 ELSE
607 CALL add_hill_single(hills_env, colvars, ww, hills_env%n_hills, n_colvar)
608 END IF
609
610 i_hills = i_hills + 1
611 filename = trim(multiple_walkers%walkers_file_name(i))//"_"// &
612 trim(adjustl(cp_to_string(i_hills)))
613 IF (para_env%is_source()) THEN
614 INQUIRE (file=trim(filename), exist=exist)
615 END IF
616 CALL para_env%bcast(exist)
617 END DO
618
619 delta_hills = i_hills - 1 - multiple_walkers%walkers_status(i)
620 multiple_walkers%walkers_status(i) = i_hills - 1
621 iw = cp_print_key_unit_nr(logger, metadyn_section, "PRINT%PROGRAM_RUN_INFO", &
622 extension=".metadynLog")
623 IF (iw > 0) THEN
624 WRITE (iw, '(T2,A,I0,A,I0,A,I0,A)') 'WALKERS| Walker #', i, '. Reading [', delta_hills, &
625 '] Hills. Total number of Hills acquired [', multiple_walkers%walkers_status(i), ']'
626 END IF
627 CALL cp_print_key_finished_output(iw, logger, metadyn_section, &
628 "PRINT%PROGRAM_RUN_INFO")
629 END DO
630
631 ! Restore colvars information
632 DO i = 1, n_colvar
633 colvars(i)%ss0 = ss0_save(i)
634 colvars(i)%delta_s = delta_s_save(i)
635 END DO
636 DEALLOCATE (ss0_save)
637 DEALLOCATE (delta_s_save)
638 END IF
639
640 CALL timestop(handle)
641
642 END SUBROUTINE synchronize_multiple_walkers
643
644! **************************************************************************************************
645!> \brief Add a single Hill
646!> \param hills_env ...
647!> \param colvars ...
648!> \param ww ...
649!> \param n_hills ...
650!> \param n_colvar ...
651!> \param invdt ...
652!> \author Teodoro Laino [tlaino] - University of Zurich - 10.2008
653! **************************************************************************************************
654 SUBROUTINE add_hill_single(hills_env, colvars, ww, n_hills, n_colvar, invdt)
655 TYPE(hills_env_type), POINTER :: hills_env
656 TYPE(metavar_type), DIMENSION(:), POINTER :: colvars
657 REAL(kind=dp), INTENT(IN) :: ww
658 INTEGER, INTENT(INOUT) :: n_hills
659 INTEGER, INTENT(IN) :: n_colvar
660 REAL(kind=dp), INTENT(IN), OPTIONAL :: invdt
661
662 CHARACTER(len=*), PARAMETER :: routinen = 'add_hill_single'
663
664 INTEGER :: handle, i
665 LOGICAL :: wtcontrol
666 REAL(kind=dp), DIMENSION(:), POINTER :: tnp
667 REAL(kind=dp), DIMENSION(:, :), POINTER :: tmp
668
669 CALL timeset(routinen, handle)
670
671 wtcontrol = PRESENT(invdt)
672 NULLIFY (tmp, tnp)
673 IF (SIZE(hills_env%ss_history, 2) < n_hills + 1) THEN
674 ALLOCATE (tmp(n_colvar, n_hills + 100))
675 tmp(:, :n_hills) = hills_env%ss_history
676 tmp(:, n_hills + 1:) = 0.0_dp
677 DEALLOCATE (hills_env%ss_history)
678 hills_env%ss_history => tmp
679 NULLIFY (tmp)
680 END IF
681 IF (SIZE(hills_env%delta_s_history, 2) < n_hills + 1) THEN
682 ALLOCATE (tmp(n_colvar, n_hills + 100))
683 tmp(:, :n_hills) = hills_env%delta_s_history
684 tmp(:, n_hills + 1:) = 0.0_dp
685 DEALLOCATE (hills_env%delta_s_history)
686 hills_env%delta_s_history => tmp
687 NULLIFY (tmp)
688 END IF
689 IF (SIZE(hills_env%ww_history) < n_hills + 1) THEN
690 ALLOCATE (tnp(n_hills + 100))
691 tnp(1:n_hills) = hills_env%ww_history
692 tnp(n_hills + 1:) = 0.0_dp
693 DEALLOCATE (hills_env%ww_history)
694 hills_env%ww_history => tnp
695 NULLIFY (tnp)
696 END IF
697 IF (wtcontrol) THEN
698 IF (SIZE(hills_env%invdt_history) < n_hills + 1) THEN
699 ALLOCATE (tnp(n_hills + 100))
700 tnp(1:n_hills) = hills_env%invdt_history
701 tnp(n_hills + 1:) = 0.0_dp
702 DEALLOCATE (hills_env%invdt_history)
703 hills_env%invdt_history => tnp
704 NULLIFY (tnp)
705 END IF
706 END IF
707 n_hills = n_hills + 1
708 ! Now add the hill
709 DO i = 1, n_colvar
710 hills_env%ss_history(i, n_hills) = colvars(i)%ss0
711 hills_env%delta_s_history(i, n_hills) = colvars(i)%delta_s
712 END DO
713 hills_env%ww_history(n_hills) = ww
714 IF (wtcontrol) hills_env%invdt_history(n_hills) = invdt
715
716 CALL timestop(handle)
717
718 END SUBROUTINE add_hill_single
719
720! **************************************************************************************************
721!> \brief Restart Hills Information
722!> \param ss_history ...
723!> \param delta_s_history ...
724!> \param ww_history ...
725!> \param ww ...
726!> \param n_hills ...
727!> \param n_colvar ...
728!> \param colvars ...
729!> \param metadyn_section ...
730!> \param invdt_history ...
731!> \author Teodoro Laino [tlaino] - University of Zurich - 10.2008
732! **************************************************************************************************
733 SUBROUTINE restart_hills(ss_history, delta_s_history, ww_history, ww, &
734 n_hills, n_colvar, colvars, metadyn_section, invdt_history)
735 REAL(kind=dp), DIMENSION(:, :), POINTER :: ss_history, delta_s_history
736 REAL(kind=dp), DIMENSION(:), POINTER :: ww_history
737 REAL(kind=dp) :: ww
738 INTEGER, INTENT(IN) :: n_hills, n_colvar
739 TYPE(metavar_type), DIMENSION(:), POINTER :: colvars
740 TYPE(section_vals_type), POINTER :: metadyn_section
741 REAL(kind=dp), DIMENSION(:), OPTIONAL, POINTER :: invdt_history
742
743 CHARACTER(len=*), PARAMETER :: routinen = 'restart_hills'
744
745 INTEGER :: handle, i, j, ndum
746 LOGICAL :: explicit, wtcontrol
747 REAL(kind=dp) :: rval
748 REAL(kind=dp), DIMENSION(:), POINTER :: rvals
749 TYPE(section_vals_type), POINTER :: hills_history
750
751 CALL timeset(routinen, handle)
752
753 wtcontrol = PRESENT(invdt_history)
754 NULLIFY (rvals)
755 hills_history => section_vals_get_subs_vals(metadyn_section, "SPAWNED_HILLS_POS")
756 CALL section_vals_get(hills_history, explicit=explicit)
757 IF (explicit) THEN
758 CALL section_vals_val_get(hills_history, "_DEFAULT_KEYWORD_", n_rep_val=ndum)
759 ! ss_history, delta_s_history, ww_history, invdt_history : deallocate and reallocate with the proper size
760 DEALLOCATE (ss_history)
761 DEALLOCATE (delta_s_history)
762 DEALLOCATE (ww_history)
763 IF (wtcontrol) THEN
764 DEALLOCATE (invdt_history)
765 END IF
766 !
767 cpassert(n_hills == ndum)
768 ALLOCATE (ss_history(n_colvar, n_hills))
769 ALLOCATE (delta_s_history(n_colvar, n_hills))
770 ALLOCATE (ww_history(n_hills))
771 IF (wtcontrol) THEN
772 ALLOCATE (invdt_history(n_hills))
773 END IF
774 !
775 DO i = 1, n_hills
776 CALL section_vals_val_get(hills_history, "_DEFAULT_KEYWORD_", &
777 i_rep_val=i, r_vals=rvals)
778 cpassert(SIZE(rvals) == n_colvar)
779 ss_history(1:n_colvar, i) = rvals
780 END DO
781 !
782 hills_history => section_vals_get_subs_vals(metadyn_section, "SPAWNED_HILLS_SCALE")
783 CALL section_vals_get(hills_history, explicit=explicit)
784 IF (explicit) THEN
785 ! delta_s_history
786 CALL section_vals_val_get(hills_history, "_DEFAULT_KEYWORD_", n_rep_val=ndum)
787 cpassert(n_hills == ndum)
788 DO i = 1, n_hills
789 CALL section_vals_val_get(hills_history, "_DEFAULT_KEYWORD_", &
790 i_rep_val=i, r_vals=rvals)
791 cpassert(SIZE(rvals) == n_colvar)
792 delta_s_history(1:n_colvar, i) = rvals
793 END DO
794 ELSE
795 CALL cp_warn(__location__, &
796 "Section SPAWNED_HILLS_SCALE is not present! Setting the scales of the "// &
797 "restarted hills according the parameters specified in the input file.")
798 DO i = 1, n_hills
799 DO j = 1, n_colvar
800 delta_s_history(j, i) = colvars(i)%delta_s
801 END DO
802 END DO
803 END IF
804 !
805 hills_history => section_vals_get_subs_vals(metadyn_section, "SPAWNED_HILLS_HEIGHT")
806 CALL section_vals_get(hills_history, explicit=explicit)
807 IF (explicit) THEN
808 ! ww_history
809 CALL section_vals_val_get(hills_history, "_DEFAULT_KEYWORD_", &
810 n_rep_val=ndum)
811 cpassert(n_hills == ndum)
812 DO i = 1, n_hills
813 CALL section_vals_val_get(hills_history, "_DEFAULT_KEYWORD_", &
814 i_rep_val=i, r_val=rval)
815 cpassert(SIZE(rvals) == n_colvar)
816 ww_history(i) = rval
817 END DO
818 ELSE
819 CALL cp_warn(__location__, &
820 "Section SPAWNED_HILLS_HEIGHT is not present! Setting the height of the"// &
821 " restarted hills according the parameters specified in the input file. ")
822 ww_history = ww
823 END IF
824 !
825 hills_history => section_vals_get_subs_vals(metadyn_section, "SPAWNED_HILLS_INVDT")
826 CALL section_vals_get(hills_history, explicit=explicit)
827 IF (wtcontrol) THEN
828 IF (explicit) THEN
829 ! invdt_history
830 CALL section_vals_val_get(hills_history, "_DEFAULT_KEYWORD_", &
831 n_rep_val=ndum)
832 cpassert(n_hills == ndum)
833 DO i = 1, n_hills
834 CALL section_vals_val_get(hills_history, "_DEFAULT_KEYWORD_", &
835 i_rep_val=i, r_val=rval)
836 cpassert(SIZE(rvals) == n_colvar)
837 invdt_history(i) = rval
838 END DO
839 ELSE
840 CALL cp_warn(__location__, &
841 "Section SPAWNED_HILLS_INVDT is not present! Restarting from standard"// &
842 " metadynamics run i.e. setting 1/(Delta T) equal to zero. ")
843 invdt_history = 0._dp
844 END IF
845 ELSE
846 IF (explicit) THEN
847 CALL cp_abort(__location__, &
848 "Found section SPAWNED_HILLS_INVDT while restarting a standard metadynamics run..."// &
849 " Cannot restart metadynamics from well-tempered MetaD runs. ")
850 END IF
851 END IF
852 END IF
853
854 CALL timestop(handle)
855
856 END SUBROUTINE restart_hills
857
858! **************************************************************************************************
859!> \brief Retrieves the iteration level for the metadynamics loop
860!> \param meta_env ...
861!> \param iter_nr ...
862!> \author Teodoro Laino [tlaino] - University of Zurich - 10.2008
863! **************************************************************************************************
864 SUBROUTINE get_meta_iter_level(meta_env, iter_nr)
865 TYPE(meta_env_type), POINTER :: meta_env
866 INTEGER, INTENT(OUT) :: iter_nr
867
868 IF (meta_env%do_multiple_walkers) THEN
869 iter_nr = meta_env%multiple_walkers%n_hills_local
870 ELSE
871 iter_nr = meta_env%hills_env%n_hills
872 END IF
873
874 END SUBROUTINE get_meta_iter_level
875
876! **************************************************************************************************
877!> \brief ...
878!> \param meta_env ...
879!> \par History
880!> 11.2007 [created] [tlaino]
881!> \author Teodoro Laino - University of Zurich - 11.2007
882! **************************************************************************************************
883 SUBROUTINE meta_walls(meta_env)
884 TYPE(meta_env_type), POINTER :: meta_env
885
886 INTEGER :: ih, iwall
887 REAL(dp) :: ddp, delta_s, dfunc, diff_ss, dp2, &
888 efunc, ww
889 TYPE(metavar_type), DIMENSION(:), POINTER :: colvars
890
891 colvars => meta_env%metavar
892 ! Forces from the Walls
893 DO ih = 1, SIZE(colvars)
894 IF (colvars(ih)%do_wall) THEN
895 colvars(ih)%epot_walls = 0.0_dp
896 colvars(ih)%ff_walls = 0.0_dp
897 DO iwall = 1, SIZE(colvars(ih)%walls)
898 SELECT CASE (colvars(ih)%walls(iwall)%id_type)
899 CASE (do_wall_reflective, do_wall_none)
900 ! Do Nothing.. treated in the main metadyn function
901 cycle
902 CASE (do_wall_quadratic)
903 diff_ss = colvars(ih)%ss0 - colvars(ih)%walls(iwall)%pos
904 IF (colvars(ih)%periodic) THEN
905 ! The difference of a periodic COLVAR is always within [-pi,pi]
906 diff_ss = sign(1.0_dp, asin(sin(diff_ss)))*acos(cos(diff_ss))
907 END IF
908 efunc = colvars(ih)%walls(iwall)%k_quadratic*diff_ss**2
909 dfunc = 2.0_dp*colvars(ih)%walls(iwall)%k_quadratic*diff_ss
910 SELECT CASE (colvars(ih)%walls(iwall)%id_direction)
911 CASE (do_wall_p)
912 IF (diff_ss > 0.0_dp) THEN
913 colvars(ih)%ff_walls = colvars(ih)%ff_walls - dfunc
914 colvars(ih)%epot_walls = colvars(ih)%epot_walls + efunc
915 END IF
916 CASE (do_wall_m)
917 IF (diff_ss < 0.0_dp) THEN
918 colvars(ih)%ff_walls = colvars(ih)%ff_walls - dfunc
919 colvars(ih)%epot_walls = colvars(ih)%epot_walls + efunc
920 END IF
921 END SELECT
922 CASE (do_wall_quartic)
923 diff_ss = colvars(ih)%ss0 - colvars(ih)%walls(iwall)%pos0
924 IF (colvars(ih)%periodic) THEN
925 ! The difference of a periodic COLVAR is always within [-pi,pi]
926 diff_ss = sign(1.0_dp, asin(sin(diff_ss)))*acos(cos(diff_ss))
927 END IF
928 efunc = colvars(ih)%walls(iwall)%k_quartic*diff_ss*diff_ss**4
929 dfunc = 4.0_dp*colvars(ih)%walls(iwall)%k_quartic*diff_ss**3
930 SELECT CASE (colvars(ih)%walls(iwall)%id_direction)
931 CASE (do_wall_p)
932 IF (diff_ss > 0.0_dp) THEN
933 colvars(ih)%ff_walls = colvars(ih)%ff_walls - dfunc
934 colvars(ih)%epot_walls = colvars(ih)%epot_walls + efunc
935 END IF
936 CASE (do_wall_m)
937 IF (diff_ss < 0.0_dp) THEN
938 colvars(ih)%ff_walls = colvars(ih)%ff_walls - dfunc
939 colvars(ih)%epot_walls = colvars(ih)%epot_walls + efunc
940 END IF
941 END SELECT
942 CASE (do_wall_gaussian)
943 diff_ss = colvars(ih)%ss0 - colvars(ih)%walls(iwall)%pos
944 IF (colvars(ih)%periodic) THEN
945 ! The difference of a periodic COLVAR is always within [-pi,pi]
946 diff_ss = sign(1.0_dp, asin(sin(diff_ss)))*acos(cos(diff_ss))
947 END IF
948 ww = colvars(ih)%walls(iwall)%ww_gauss
949 delta_s = colvars(ih)%walls(iwall)%sigma_gauss
950 ddp = (diff_ss)/delta_s
951 dp2 = ddp**2
952 efunc = ww*exp(-0.5_dp*dp2)
953 dfunc = -efunc*ddp/delta_s
954 colvars(ih)%ff_walls = colvars(ih)%ff_walls - dfunc
955 colvars(ih)%epot_walls = colvars(ih)%epot_walls + efunc
956 END SELECT
957 END DO
958 END IF
959 END DO
960 END SUBROUTINE meta_walls
961
962END MODULE metadynamics_utils
modulo
static GRID_HOST_DEVICE int modulo(int a, int m)
Equivalent of Fortran's MODULO, which always return a positive number. https://gcc....
Definition grid_common.h:120
cp_log_handling::cp_to_string
Definition cp_log_handling.F:90
cp_files
Utility routines to open and close files. Tracking of preconnections.
Definition cp_files.F:16
cp_files::open_file
subroutine, public open_file(file_name, file_status, file_form, file_action, file_position, file_pad, unit_number, debug, skip_get_unit_number, file_access)
Opens the requested file using a free unit number.
Definition cp_files.F:308
cp_files::close_file
subroutine, public close_file(unit_number, file_status, keep_preconnection)
Close an open file given by its logical unit number. Optionally, keep the file and unit preconnected.
Definition cp_files.F:119
cp_log_handling
various routines to log and control the output. The idea is that decisions about where to log should ...
Definition cp_log_handling.F:41
cp_log_handling::cp_get_default_logger
type(cp_logger_type) function, pointer, public cp_get_default_logger()
returns the default logger
Definition cp_log_handling.F:234
cp_output_handling
routines to handle the output, The idea is to remove the decision of wheter to output and what to out...
Definition cp_output_handling.F:25
cp_output_handling::cp_print_key_unit_nr
integer function, public cp_print_key_unit_nr(logger, basis_section, print_key_path, extension, middle_name, local, log_filename, ignore_should_output, file_form, file_position, file_action, file_status, do_backup, on_file, is_new_file, mpi_io, fout)
...
Definition cp_output_handling.F:853
cp_output_handling::cp_print_key_finished_output
subroutine, public cp_print_key_finished_output(unit_nr, logger, basis_section, print_key_path, local, ignore_should_output, on_file, mpi_io)
should be called after you finish working with a unit obtained with cp_print_key_unit_nr,...
Definition cp_output_handling.F:1063
cp_subsys_types
types that represent a subsys, i.e. a part of the system
Definition cp_subsys_types.F:16
force_env_types
Interface for the force calculations.
Definition force_env_types.F:18
force_env_types::force_env_get
recursive subroutine, public force_env_get(force_env, in_use, fist_env, qs_env, meta_env, fp_env, subsys, para_env, potential_energy, additional_potential, kinetic_energy, harmonic_shell, kinetic_shell, cell, sub_force_env, qmmm_env, qmmmx_env, eip_env, pwdft_env, globenv, input, force_env_section, method_name_id, root_section, mixed_env, nnp_env, embed_env, ipi_env)
returns various attributes about the force environment
Definition force_env_types.F:342
input_constants
collects all constants needed in input so that they can be used without circular dependencies
Definition input_constants.F:17
input_constants::do_wall_p
integer, parameter, public do_wall_p
Definition input_constants.F:373
input_constants::do_wall_m
integer, parameter, public do_wall_m
Definition input_constants.F:373
input_constants::do_wall_none
integer, parameter, public do_wall_none
Definition input_constants.F:367
input_constants::do_wall_gaussian
integer, parameter, public do_wall_gaussian
Definition input_constants.F:367
input_constants::do_wall_quartic
integer, parameter, public do_wall_quartic
Definition input_constants.F:367
input_constants::do_wall_reflective
integer, parameter, public do_wall_reflective
Definition input_constants.F:367
input_constants::do_wall_quadratic
integer, parameter, public do_wall_quadratic
Definition input_constants.F:367
input_constants::do_fe_meta
integer, parameter, public do_fe_meta
Definition input_constants.F:363
input_cp2k_free_energy
Definition input_cp2k_free_energy.F:13
input_cp2k_free_energy::create_metavar_section
subroutine, public create_metavar_section(section)
creates the metavar section
Definition input_cp2k_free_energy.F:633
input_enumeration_types
represents an enumeration, i.e. a mapping between integers and strings
Definition input_enumeration_types.F:14
input_enumeration_types::enum_i2c
character(len=default_string_length) function, public enum_i2c(enum, i)
maps an integer to a string
Definition input_enumeration_types.F:152
input_keyword_types
represents keywords in an input
Definition input_keyword_types.F:14
input_keyword_types::keyword_get
subroutine, public keyword_get(keyword, names, usage, description, type_of_var, n_var, default_value, lone_keyword_value, repeats, enum, citations)
...
Definition input_keyword_types.F:480
input_section_types
objects that represent the structure of input sections and the data contained in an input section
Definition input_section_types.F:15
input_section_types::section_get_subsection
type(section_type) function, pointer, public section_get_subsection(section, subsection_name)
returns the requested subsection
Definition input_section_types.F:410
input_section_types::section_vals_get_subs_vals
recursive type(section_vals_type) function, pointer, public section_vals_get_subs_vals(section_vals, subsection_name, i_rep_section, can_return_null)
returns the values of the requested subsection
Definition input_section_types.F:731
input_section_types::section_release
recursive subroutine, public section_release(section)
releases the given keyword list (see doc/ReferenceCounting.html)
Definition input_section_types.F:238
input_section_types::section_get_keyword
recursive type(keyword_type) function, pointer, public section_get_keyword(section, keyword_name)
returns the requested keyword
Definition input_section_types.F:478
input_section_types::section_vals_get
subroutine, public section_vals_get(section_vals, ref_count, n_repetition, n_subs_vals_rep, section, explicit)
returns various attributes about the section_vals
Definition input_section_types.F:704
input_section_types::section_vals_val_get
subroutine, public section_vals_val_get(section_vals, keyword_name, i_rep_section, i_rep_val, n_rep_val, val, l_val, i_val, r_val, c_val, l_vals, i_vals, r_vals, c_vals, explicit)
returns the requested value
Definition input_section_types.F:1047
kinds
Defines the basic variable types.
Definition kinds.F:23
kinds::dp
integer, parameter, public dp
Definition kinds.F:34
kinds::default_path_length
integer, parameter, public default_path_length
Definition kinds.F:58
machine
Machine interface based on Fortran 2003 and POSIX.
Definition machine.F:17
machine::m_mov
subroutine, public m_mov(source, target)
...
Definition machine.F:701
message_passing
Interface to the message passing library MPI.
Definition message_passing.F:23
metadynamics_types
defines types for metadynamics calculation
Definition metadynamics_types.F:13
metadynamics_types::metadyn_create
subroutine, public metadyn_create(meta_env, n_colvar, dt, para_env, metadyn_section)
allocates a metadynamic environment (performs only minimal initialization)
Definition metadynamics_types.F:145
metadynamics_utils
Performs the metadynamics calculation.
Definition metadynamics_utils.F:14
metadynamics_utils::synchronize_multiple_walkers
subroutine, public synchronize_multiple_walkers(multiple_walkers, hills_env, colvars, n_colvar, metadyn_section)
Synchronize with the rest of the walkers.
Definition metadynamics_utils.F:509
metadynamics_utils::metadyn_read
subroutine, public metadyn_read(meta_env, force_env, root_section, para_env, fe_section)
reads metadynamics section
Definition metadynamics_utils.F:84
metadynamics_utils::get_meta_iter_level
subroutine, public get_meta_iter_level(meta_env, iter_nr)
Retrieves the iteration level for the metadynamics loop.
Definition metadynamics_utils.F:865
metadynamics_utils::meta_walls
subroutine, public meta_walls(meta_env)
...
Definition metadynamics_utils.F:884
metadynamics_utils::restart_hills
subroutine, public restart_hills(ss_history, delta_s_history, ww_history, ww, n_hills, n_colvar, colvars, metadyn_section, invdt_history)
Restart Hills Information.
Definition metadynamics_utils.F:735
metadynamics_utils::add_hill_single
subroutine, public add_hill_single(hills_env, colvars, ww, n_hills, n_colvar, invdt)
Add a single Hill.
Definition metadynamics_utils.F:655
physcon
Definition of physical constants:
Definition physcon.F:68
physcon::kelvin
real(kind=dp), parameter, public kelvin
Definition physcon.F:165
cp_log_handling::cp_logger_type
type of a logger, at the moment it contains just a print level starting at which level it should be l...
Definition cp_log_handling.F:140
cp_subsys_types::cp_subsys_type
represents a system: atoms, molecules, their pos,vel,...
Definition cp_subsys_types.F:89
force_env_types::force_env_type
wrapper to abstract the force evaluation of the various methods
Definition force_env_types.F:145
input_enumeration_types::enumeration_type
Definition input_enumeration_types.F:43
input_keyword_types::keyword_type
represent a keyword in the input
Definition input_keyword_types.F:88
input_section_types::section_type
represent a section of the input file
Definition input_section_types.F:102
input_section_types::section_vals_type
stores the values of a section
Definition input_section_types.F:127
message_passing::mp_para_env_type
stores all the informations relevant to an mpi environment
Definition message_passing.F:763
metadynamics_types::hills_env_type
defines types for HILLS
Definition metadynamics_types.F:40
metadynamics_types::meta_env_type
defines meta_env type
Definition metadynamics_types.F:95
metadynamics_types::metavar_type
defines types for COLVAR used in the metadynamics
Definition metadynamics_types.F:69
metadynamics_types::multiple_walkers_type
defines types for multiple walkers run
Definition metadynamics_types.F:82