fist_neighbor_list_control.F

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!--------------------------------------------------------------------------------------------------!
!   CP2K: A general program to perform molecular dynamics simulations                              !
!   Copyright 2000-2024 CP2K developers group <https://cp2k.org>                                   !
!                                                                                                  !
!   SPDX-License-Identifier: GPL-2.0-or-later                                                      !
!--------------------------------------------------------------------------------------------------!
 
! **************************************************************************************************
!> \par History
!>      Harald Forbert (Dec-2000): Changes for multiple linked lists
!>                                 linklist_internal_data_type
!>      07.02.2005: using real coordinates for r_last_update; cleaned (MK)
!> \author CJM,MK
! **************************************************************************************************
MODULE fist_neighbor_list_control
 
   USE atomic_kind_types,               ONLY: atomic_kind_type,&
                                              get_atomic_kind_set
   USE cell_methods,                    ONLY: cell_create
   USE cell_types,                      ONLY: cell_clone,&
                                              cell_release,&
                                              cell_type,&
                                              pbc,&
                                              real_to_scaled,&
                                              scaled_to_real
   USE cp_log_handling,                 ONLY: cp_get_default_logger,&
                                              cp_logger_type
   USE cp_output_handling,              ONLY: cp_print_key_finished_output,&
                                              cp_print_key_unit_nr
   USE distribution_1d_types,           ONLY: distribution_1d_type
   USE exclusion_types,                 ONLY: exclusion_type
   USE fist_neighbor_list_types,        ONLY: fist_neighbor_type
   USE fist_neighbor_lists,             ONLY: build_fist_neighbor_lists
   USE fist_nonbond_env_types,          ONLY: fist_nonbond_env_get,&
                                              fist_nonbond_env_set,&
                                              fist_nonbond_env_type,&
                                              pos_type
   USE input_section_types,             ONLY: section_vals_type,&
                                              section_vals_val_get
   USE kinds,                           ONLY: dp
   USE message_passing,                 ONLY: mp_para_env_type
   USE pair_potential_types,            ONLY: allegro_type,&
                                              gal21_type,&
                                              gal_type,&
                                              nequip_type,&
                                              pair_potential_pp_type,&
                                              siepmann_type,&
                                              tersoff_type
   USE particle_types,                  ONLY: particle_type
#include "./base/base_uses.f90"
 
   IMPLICIT NONE
 
   PRIVATE
 
   CHARACTER(len=*), PARAMETER, PRIVATE :: moduleN = 'fist_neighbor_list_control'
 
   PUBLIC :: list_control
 
!***
 
CONTAINS
 
! to decide whether the neighbor list is to be updated or not
! based on a displacement criterion;
! if any particle has moved by 0.5*verlet_skin from the previous
! list update, then the list routine is called.
 
! **************************************************************************************************
!> \brief ...
!> \param atomic_kind_set ...
!> \param particle_set ...
!> \param local_particles ...
!> \param cell ...
!> \param fist_nonbond_env ...
!> \param para_env ...
!> \param mm_section ...
!> \param shell_particle_set ...
!> \param core_particle_set ...
!> \param force_update ...
!> \param exclusions ...
! **************************************************************************************************
   SUBROUTINE list_control(atomic_kind_set, particle_set, local_particles, &
                           cell, fist_nonbond_env, para_env, mm_section, shell_particle_set, &
                           core_particle_set, force_update, exclusions)
 
      TYPE(atomic_kind_type), POINTER                    :: atomic_kind_set(:)
      TYPE(particle_type), POINTER                       :: particle_set(:)
      TYPE(distribution_1d_type), POINTER                :: local_particles
      TYPE(cell_type), POINTER                           :: cell
      TYPE(fist_nonbond_env_type), POINTER               :: fist_nonbond_env
      TYPE(mp_para_env_type), POINTER                    :: para_env
      TYPE(section_vals_type), POINTER                   :: mm_section
      TYPE(particle_type), OPTIONAL, POINTER             :: shell_particle_set(:), &
                                                            core_particle_set(:)
      LOGICAL, INTENT(IN), OPTIONAL                      :: force_update
      TYPE(exclusion_type), DIMENSION(:), OPTIONAL       :: exclusions
 
      CHARACTER(LEN=*), PARAMETER                        :: routinen = 'list_control'
 
      INTEGER :: counter, handle, ikind, iparticle, iparticle_kind, iparticle_local, ishell, &
         jkind, last_update, nparticle, nparticle_kind, nparticle_local, nshell, num_update, &
         output_unit
      LOGICAL                                            :: build_from_scratch, geo_check, &
                                                            shell_adiabatic, shell_present, &
                                                            update_neighbor_lists
      LOGICAL, DIMENSION(:, :), POINTER                  :: full_nl
      REAL(kind=dp)                                      :: aup, dr2, dr2_max, ei_scale14, lup, &
                                                            vdw_scale14, verlet_skin
      REAL(kind=dp), DIMENSION(3)                        :: dr, rab, rab_last_update, s, s2r
      REAL(kind=dp), DIMENSION(:, :), POINTER            :: rlist_cut, rlist_lowsq
      TYPE(cell_type), POINTER                           :: cell_last_update
      TYPE(cp_logger_type), POINTER                      :: logger
      TYPE(fist_neighbor_type), POINTER                  :: nonbonded
      TYPE(pair_potential_pp_type), POINTER              :: potparm
      TYPE(pos_type), DIMENSION(:), POINTER              :: r_last_update, r_last_update_pbc, &
                                                            rcore_last_update_pbc, &
                                                            rshell_last_update_pbc
 
      CALL timeset(routinen, handle)
      NULLIFY (logger)
      logger => cp_get_default_logger()
 
      ! *** Assigning local pointers ***
      CALL fist_nonbond_env_get(fist_nonbond_env, &
                                nonbonded=nonbonded, &
                                rlist_cut=rlist_cut, &
                                rlist_lowsq=rlist_lowsq, &
                                aup=aup, &
                                lup=lup, &
                                ei_scale14=ei_scale14, &
                                vdw_scale14=vdw_scale14, &
                                counter=counter, &
                                r_last_update=r_last_update, &
                                r_last_update_pbc=r_last_update_pbc, &
                                rshell_last_update_pbc=rshell_last_update_pbc, &
                                rcore_last_update_pbc=rcore_last_update_pbc, &
                                cell_last_update=cell_last_update, &
                                num_update=num_update, &
                                potparm=potparm, &
                                last_update=last_update)
 
      nparticle = SIZE(particle_set)
      nparticle_kind = SIZE(atomic_kind_set)
      nshell = 0
      CALL get_atomic_kind_set(atomic_kind_set=atomic_kind_set, &
                               shell_present=shell_present, shell_adiabatic=shell_adiabatic)
      IF (shell_present) THEN
         nshell = SIZE(shell_particle_set)
      END IF
 
      ! *** Check, if the neighbor lists have to be built or updated ***
      update_neighbor_lists = .false.
      CALL section_vals_val_get(mm_section, "NEIGHBOR_LISTS%NEIGHBOR_LISTS_FROM_SCRATCH", &
                                l_val=build_from_scratch)
      CALL section_vals_val_get(mm_section, "NEIGHBOR_LISTS%GEO_CHECK", &
                                l_val=geo_check)
      IF (ASSOCIATED(r_last_update)) THEN
         ! Determine the maximum of the squared displacement, compared to
         ! r_last_update.
         CALL section_vals_val_get(mm_section, "NEIGHBOR_LISTS%VERLET_SKIN", &
                                   r_val=verlet_skin)
         dr2_max = 0.0_dp
         DO iparticle_kind = 1, nparticle_kind
            nparticle_local = local_particles%n_el(iparticle_kind)
            DO iparticle_local = 1, nparticle_local
               iparticle = local_particles%list(iparticle_kind)%array(iparticle_local)
               s2r = r_last_update(iparticle)%r
               s = particle_set(iparticle)%r(:)
               dr(:) = s2r - s
               dr2 = dr(1)*dr(1) + dr(2)*dr(2) + dr(3)*dr(3)
               dr2_max = max(dr2_max, dr2)
            END DO
         END DO
 
         CALL para_env%max(dr2_max)
 
         ! If the maximum distplacement is too large, ...
         IF (dr2_max > 0.25_dp*verlet_skin**2 .OR. build_from_scratch) THEN
            DO iparticle = 1, nparticle
               r_last_update(iparticle)%r = particle_set(iparticle)%r(:)
            END DO
            update_neighbor_lists = .true.
         END IF
      ELSE
         ! There is no r_last_update to compare with. Neighbor lists from scratch.
         ALLOCATE (r_last_update(nparticle))
         DO iparticle = 1, nparticle
            r_last_update(iparticle)%r = particle_set(iparticle)%r(:)
         END DO
 
         update_neighbor_lists = .true.
         build_from_scratch = .true.
      END IF
      ! Force Update
      IF (PRESENT(force_update)) THEN
         IF (force_update) update_neighbor_lists = .true.
      END IF
 
      ! Allocate the r_last_update_pbc, rshell_last_update_pbc, rcore_last_update_pbc
      IF (.NOT. ASSOCIATED(r_last_update_pbc)) THEN
         ALLOCATE (r_last_update_pbc(nparticle))
      END IF
      IF (shell_present .AND. .NOT. ASSOCIATED(rshell_last_update_pbc)) THEN
         ALLOCATE (rshell_last_update_pbc(nshell))
      END IF
      IF (shell_present .AND. .NOT. ASSOCIATED(rcore_last_update_pbc)) THEN
         ALLOCATE (rcore_last_update_pbc(nshell))
      END IF
 
      ! update the neighbor lists
      IF (update_neighbor_lists) THEN
         ! determine which pairs of atom kinds need full neighbor lists. Full
         ! means that atom a is in the neighbor list of atom b and vice versa.
         ALLOCATE (full_nl(nparticle_kind, nparticle_kind))
         IF (ASSOCIATED(potparm)) THEN
            DO ikind = 1, nparticle_kind
               DO jkind = ikind, nparticle_kind
                  full_nl(ikind, jkind) = .false.
                  IF (any(potparm%pot(ikind, jkind)%pot%type == tersoff_type)) THEN
                     full_nl(ikind, jkind) = .true.
                  END IF
                  IF (any(potparm%pot(ikind, jkind)%pot%type == siepmann_type)) THEN
                     full_nl(ikind, jkind) = .true.
                  END IF
                  IF (any(potparm%pot(ikind, jkind)%pot%type == gal_type)) THEN
                     full_nl(ikind, jkind) = .true.
                  END IF
                  IF (any(potparm%pot(ikind, jkind)%pot%type == gal21_type)) THEN
                     full_nl(ikind, jkind) = .true.
                  END IF
                  IF (any(potparm%pot(ikind, jkind)%pot%type == nequip_type)) THEN
                     full_nl(ikind, jkind) = .true.
                  END IF
                  IF (any(potparm%pot(ikind, jkind)%pot%type == allegro_type)) THEN
                     full_nl(ikind, jkind) = .true.
                  END IF
                  full_nl(jkind, ikind) = full_nl(ikind, jkind)
               END DO
            END DO
         ELSE
            full_nl = .false.
         END IF
         CALL build_fist_neighbor_lists(atomic_kind_set, particle_set, &
                                        local_particles, cell, rlist_cut, rlist_lowsq, ei_scale14, &
                                        vdw_scale14, nonbonded, para_env, &
                                        build_from_scratch=build_from_scratch, geo_check=geo_check, &
                                        mm_section=mm_section, full_nl=full_nl, &
                                        exclusions=exclusions)
 
         CALL cell_release(cell_last_update)
         CALL cell_create(cell_last_update)
         CALL cell_clone(cell, cell_last_update)
 
         IF (counter > 0) THEN
            num_update = num_update + 1
            lup = counter + 1 - last_update
            last_update = counter + 1
            aup = aup + (lup - aup)/real(num_update, kind=dp)
         ELSE
            num_update = 0
            lup = 0
            last_update = 1
            aup = 0.0_dp
         END IF
 
         CALL fist_nonbond_env_set(fist_nonbond_env, &
                                   lup=lup, &
                                   aup=aup, &
                                   r_last_update=r_last_update, &
                                   r_last_update_pbc=r_last_update_pbc, &
                                   rshell_last_update_pbc=rshell_last_update_pbc, &
                                   rcore_last_update_pbc=rcore_last_update_pbc, &
                                   nonbonded=nonbonded, &
                                   num_update=num_update, &
                                   last_update=last_update, &
                                   cell_last_update=cell_last_update)
 
         output_unit = cp_print_key_unit_nr(logger, mm_section, "PRINT%NEIGHBOR_LISTS", &
                                            extension=".mmLog")
         IF (output_unit > 0) THEN
            WRITE (unit=output_unit, &
                   fmt="(/,T2,A,/,T52,A,/,A,T31,A,T49,2(1X,F15.2),/,T2,A,/)") &
               repeat("*", 79), "INSTANTANEOUS        AVERAGES", &
               " LIST UPDATES[steps]", "= ", lup, aup, repeat("*", 79)
         END IF
         CALL cp_print_key_finished_output(output_unit, logger, mm_section, &
                                           "PRINT%NEIGHBOR_LISTS")
         DEALLOCATE (full_nl)
      END IF
 
      ! Store particle positions after the last update, translated to the
      ! primitive cell, in r_last_update_pbc.
      DO iparticle = 1, nparticle
         ! The pbc algorithm is sensitive to numeric noise and compiler optimization because of ANINT.
         ! Therefore we need to call here exactly the same routine as in build_neighbor_lists.
         rab_last_update = pbc(r_last_update(iparticle)%r, cell_last_update) - r_last_update(iparticle)%r
         CALL real_to_scaled(s, rab_last_update, cell_last_update)
         CALL scaled_to_real(rab, s, cell)
 
         r_last_update_pbc(iparticle)%r = particle_set(iparticle)%r + rab
         ! Use the same translation for core and shell.
         ishell = particle_set(iparticle)%shell_index
         IF (ishell /= 0) THEN
            rshell_last_update_pbc(ishell)%r = rab + shell_particle_set(ishell)%r(:)
            IF (shell_adiabatic) THEN
               rcore_last_update_pbc(ishell)%r = rab + core_particle_set(ishell)%r(:)
            ELSE
               rcore_last_update_pbc(ishell)%r = r_last_update_pbc(iparticle)%r(:)
            END IF
         END IF
      END DO
 
      counter = counter + 1
      CALL fist_nonbond_env_set(fist_nonbond_env, counter=counter)
      CALL timestop(handle)
 
   END SUBROUTINE list_control
 
END MODULE fist_neighbor_list_control