glbopt_mincrawl.F

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!--------------------------------------------------------------------------------------------------!
!   CP2K: A general program to perform molecular dynamics simulations                              !
!   Copyright 2000-2024 CP2K developers group <https://cp2k.org>                                   !
!                                                                                                  !
!   SPDX-License-Identifier: GPL-2.0-or-later                                                      !
!--------------------------------------------------------------------------------------------------!
 
! **************************************************************************************************
!> \brief Routines for the Minima Crawling global optimization scheme
!> \author Ole Schuett
! **************************************************************************************************
MODULE glbopt_mincrawl
   USE cp_log_handling,                 ONLY: cp_get_default_logger,&
                                              cp_logger_type
   USE cp_output_handling,              ONLY: cp_print_key_finished_output,&
                                              cp_print_key_unit_nr
   USE cp_units,                        ONLY: cp_unit_from_cp2k
   USE glbopt_history,                  ONLY: history_add,&
                                              history_finalize,&
                                              history_fingerprint,&
                                              history_fingerprint_type,&
                                              history_init,&
                                              history_lookup,&
                                              history_type
   USE input_constants,                 ONLY: dump_xmol
   USE input_section_types,             ONLY: section_vals_get_subs_vals,&
                                              section_vals_type,&
                                              section_vals_val_get
   USE kinds,                           ONLY: default_string_length,&
                                              dp
   USE parallel_rng_types,              ONLY: rng_stream_type
   USE particle_methods,                ONLY: write_particle_coordinates
   USE particle_types,                  ONLY: particle_type
   USE physcon,                         ONLY: kelvin
   USE swarm_message,                   ONLY: swarm_message_add,&
                                              swarm_message_get,&
                                              swarm_message_type
#include "../base/base_uses.f90"
 
   IMPLICIT NONE
   PRIVATE
 
   CHARACTER(len=*), PARAMETER, PRIVATE :: moduleN = 'glbopt_mincrawl'
 
   PUBLIC :: mincrawl_type
   PUBLIC :: mincrawl_init, mincrawl_finalize
   PUBLIC :: mincrawl_steer
 
   TYPE minima_type
      INTEGER                                             :: id = -1
      REAL(KIND=dp), DIMENSION(:), ALLOCATABLE            :: pos
      REAL(KIND=dp), DIMENSION(:), ALLOCATABLE            :: escape_hist
      REAL(KIND=dp), DIMENSION(:), ALLOCATABLE            :: tempdist
      REAL(KIND=dp)                                       :: epot = -1.0
      TYPE(history_fingerprint_type)                      :: fp
      LOGICAL                                             :: disabled = .false.
      INTEGER                                             :: n_active = 0
      INTEGER                                             :: n_sampled = 0
   END TYPE minima_type
 
   TYPE minima_p_type
      TYPE(minima_type), POINTER                          :: p => null()
   END TYPE minima_p_type
 
   TYPE worker_state_type
      TYPE(minima_type), POINTER                          :: start_minima => null()
      INTEGER                                             :: tempstep = 0
      INTEGER                                             :: iframe = 1
   END TYPE worker_state_type
 
   TYPE mincrawl_type
      PRIVATE
      TYPE(history_type)                                  :: history
      TYPE(worker_state_type), DIMENSION(:), ALLOCATABLE  :: workers
      TYPE(minima_p_type), DIMENSION(:), ALLOCATABLE      :: minimas
      REAL(kind=dp)                                       :: tempstep_base = 0
      INTEGER                                             :: tempstep_max = 0
      REAL(kind=dp)                                       :: tempdist_init_width = 0
      REAL(kind=dp)                                       :: tempdist_update_width = 0
      REAL(kind=dp)                                       :: tempdist_update_height = 0
      INTEGER                                             :: esc_hist_len = 0
      INTEGER                                             :: tempstep_init = 0
      REAL(kind=dp), DIMENSION(:), ALLOCATABLE            :: tempdist_init
      INTEGER                                             :: n_minima = 0
      INTEGER                                             :: n_workers = 0
      INTEGER                                             :: worker_per_min = 0
      INTEGER                                             :: iw = 0
      INTEGER                                             :: minima_traj_unit = 0
      TYPE(section_vals_type), POINTER                    :: mincrawl_section => null()
      TYPE(rng_stream_type)                               :: rng_stream
      TYPE(particle_type), DIMENSION(:), POINTER          :: particle_set => null()
   END TYPE mincrawl_type
 
CONTAINS
 
! **************************************************************************************************
!> \brief Initializes master for Minima Crawling
!> \param this ...
!> \param glbopt_section ...
!> \param n_workers ...
!> \param iw ...
!> \param particle_set ...
!> \author Ole Schuett
! **************************************************************************************************
   SUBROUTINE mincrawl_init(this, glbopt_section, n_workers, iw, particle_set)
      TYPE(mincrawl_type)                                :: this
      TYPE(section_vals_type), POINTER                   :: glbopt_section
      INTEGER, INTENT(IN)                                :: n_workers, iw
      TYPE(particle_type), DIMENSION(:), POINTER         :: particle_set
 
      INTEGER                                            :: i
      REAL(kind=dp)                                      :: temp_in_kelvin
      TYPE(cp_logger_type), POINTER                      :: logger
      TYPE(section_vals_type), POINTER                   :: history_section
 
      NULLIFY (logger, history_section)
 
      ! read input
      this%mincrawl_section => section_vals_get_subs_vals(glbopt_section, "MINIMA_CRAWLING")
      CALL section_vals_val_get(this%mincrawl_section, "TEMPSTEP_BASE", r_val=this%tempstep_base)
      CALL section_vals_val_get(this%mincrawl_section, "TEMPSTEP_MAX", i_val=this%tempstep_max)
      CALL section_vals_val_get(this%mincrawl_section, "TEMPDIST_INIT_WIDTH", r_val=this%tempdist_init_width)
      CALL section_vals_val_get(this%mincrawl_section, "TEMPDIST_UPDATE_WIDTH", r_val=this%tempdist_update_width)
      CALL section_vals_val_get(this%mincrawl_section, "TEMPDIST_UPDATE_HEIGHT", r_val=this%tempdist_update_height)
      CALL section_vals_val_get(this%mincrawl_section, "TEMPERATURE_INIT", r_val=temp_in_kelvin)
      this%tempstep_init = temp2tempstep(this, temp_in_kelvin/kelvin)
      CALL section_vals_val_get(this%mincrawl_section, "WORKER_PER_MINIMA", i_val=this%worker_per_min)
      CALL section_vals_val_get(this%mincrawl_section, "ESCAPE_HISTORY_LENGTH", i_val=this%esc_hist_len)
 
      !init minima trajectory
      logger => cp_get_default_logger()
      this%minima_traj_unit = cp_print_key_unit_nr(logger, &
                                                   this%mincrawl_section, "MINIMA_TRAJECTORY", &
                                                   middle_name="minima", extension=".xyz", &
                                                   file_action="WRITE", file_position="REWIND")
 
      !init history
      history_section => section_vals_get_subs_vals(glbopt_section, "HISTORY")
      CALL history_init(this%history, history_section, iw=iw)
 
      !allocate data structures
      ALLOCATE (this%minimas(1000)) !will be grown if needed
 
      ALLOCATE (this%workers(n_workers))
      this%n_workers = n_workers
      this%iw = iw
      this%particle_set => particle_set
 
      ! call fermi-like stepfunction for initial temp-dist
      ALLOCATE (this%tempdist_init(this%tempstep_max))
      this%tempdist_init = 0.0
      DO i = 1, this%tempstep_max
         this%tempdist_init(i) = 1.0/(1.0 + exp((this%tempstep_init - i)/this%tempdist_init_width))
      END DO
 
      this%rng_stream = rng_stream_type(name="mincrawl")
   END SUBROUTINE mincrawl_init
 
! **************************************************************************************************
!> \brief Central steering routine of Minima Crawling
!> \param this ...
!> \param report ...
!> \param cmd ...
!> \author Ole Schuett
! **************************************************************************************************
   SUBROUTINE mincrawl_steer(this, report, cmd)
      TYPE(mincrawl_type)                                :: this
      TYPE(swarm_message_type)                           :: report, cmd
 
      CHARACTER(len=default_string_length)               :: status
      INTEGER                                            :: wid
      TYPE(minima_type), POINTER                         :: best_minima
 
      CALL swarm_message_get(report, "status", status)
      CALL swarm_message_get(report, "worker_id", wid)
 
      IF (trim(status) == "initial_hello") THEN
         this%workers(wid)%tempstep = this%tempstep_init
         CALL swarm_message_add(cmd, "command", "md_and_gopt")
         CALL swarm_message_add(cmd, "iframe", 1)
         CALL swarm_message_add(cmd, "temperature", tempstep2temp(this, this%workers(wid)%tempstep))
         RETURN
      END IF
 
      IF (trim(status) == "ok") &
         CALL mincrawl_register_minima(this, report)
 
      IF (.false.) CALL print_tempdist(best_minima)
 
      best_minima => choose_promising_minima(this)
 
      IF (.NOT. ASSOCIATED(best_minima)) THEN ! no suitable minima found
         CALL swarm_message_add(cmd, "command", "wait")
         !WRITE(this%iw,*) " MINCRAWL| Waiting until new minima become available"
         RETURN
      END IF
 
      best_minima%n_active = best_minima%n_active + 1
      best_minima%n_sampled = best_minima%n_sampled + 1
      this%workers(wid)%start_minima => best_minima
      this%workers(wid)%tempstep = choose_tempstep(this, best_minima)
 
      CALL swarm_message_add(cmd, "command", "md_and_gopt")
      CALL swarm_message_add(cmd, "iframe", this%workers(wid)%iframe)
      CALL swarm_message_add(cmd, "temperature", tempstep2temp(this, this%workers(wid)%tempstep))
      CALL swarm_message_add(cmd, "positions", best_minima%pos)
 
      IF (this%iw > 0) THEN
         WRITE (this%iw, '(1X,A,T71,I10)') &
            "MINCRAWL| Total number of found minima", this%n_minima
         WRITE (this%iw, '(1X,A,T71,I10)') &
            "MINCRAWL| Sampling minima with id", best_minima%id
         WRITE (this%iw, '(1X,A,I10,A,A,T71,F10.3)') &
            "MINCRAWL| Temperature  (step ", this%workers(wid)%tempstep, " ) ", &
            "[Kelvin]", kelvin*tempstep2temp(this, this%workers(wid)%tempstep)
      END IF
 
   END SUBROUTINE mincrawl_steer
 
! **************************************************************************************************
!> \brief Helper routine for mincrawl_steer, choses minimum based on its score.
!> \param this ...
!> \return ...
!> \author Ole Schuett
! **************************************************************************************************
   FUNCTION choose_promising_minima(this) RESULT(minima)
      TYPE(mincrawl_type)                                :: this
      TYPE(minima_type), POINTER                         :: minima
 
      INTEGER                                            :: i
      REAL(kind=dp)                                      :: score, score_best
 
      score_best = huge(1.0)
      NULLIFY (minima)
 
      DO i = 1, this%n_minima
         IF (this%minimas(i)%p%disabled) cycle
         IF (this%minimas(i)%p%n_active > this%worker_per_min) cycle
         score = minima_score(this%minimas(i)%p)
!       WRITE (*,*) "Minima: ", i, " active: ",this%minimas(i)%active, " E_expect: ", E_expect
         IF (score < score_best) THEN
            score_best = score
            minima => this%minimas(i)%p
         END IF
      END DO
   END FUNCTION choose_promising_minima
 
! **************************************************************************************************
!> \brief Helper routine for choose_promising_minima, calculates a minimum's score
!> \param minima ...
!> \return ...
!> \author Ole Schuett
! **************************************************************************************************
   FUNCTION minima_score(minima) RESULT(res)
      TYPE(minima_type), POINTER                         :: minima
      REAL(kind=dp)                                      :: res
 
      res = sum(minima%escape_hist)/SIZE(minima%escape_hist)
   END FUNCTION minima_score
 
! **************************************************************************************************
!> \brief Helper routine for mincrawl_steer, samples from a temp-dist.
!> \param this ...
!> \param minima ...
!> \return ...
!> \author Ole Schuett
! **************************************************************************************************
   FUNCTION choose_tempstep(this, minima) RESULT(step)
      TYPE(mincrawl_type)                                :: this
      TYPE(minima_type), POINTER                         :: minima
      INTEGER                                            :: step
 
      REAL(kind=dp)                                      :: a, r
 
      DO
         r = this%rng_stream%next()
         step = int(r*SIZE(minima%tempdist)) + 1
         a = 1.0 - 2.0*abs(minima%tempdist(step) - 0.5)
         r = this%rng_stream%next()
         IF (r < a) EXIT
      END DO
 
   END FUNCTION choose_tempstep
 
! **************************************************************************************************
!> \brief Debugging routine, prints a minimum's temp-distribution.
!> \param minima ...
!> \author Ole Schuett
! **************************************************************************************************
   SUBROUTINE print_tempdist(minima)
      TYPE(minima_type), POINTER                         :: minima
 
      INTEGER                                            :: i
 
!WRITE (*,*) "tempdist: ", SUM(minima%tempdist, DIM=1)
 
      DO i = 1, SIZE(minima%tempdist)
         WRITE (*, *) "tempstep: ", i, minima%tempdist(i)
      END DO
   END SUBROUTINE print_tempdist
 
! **************************************************************************************************
!> \brief Helper routine, convertes a  discrete temp-step to a temperature.
!> \param this ...
!> \param step ...
!> \return ...
!> \author Ole Schuett
! **************************************************************************************************
   FUNCTION tempstep2temp(this, step) RESULT(temp_in_au)
      TYPE(mincrawl_type)                                :: this
      INTEGER                                            :: step
      REAL(kind=dp)                                      :: temp_in_au
 
      temp_in_au = (this%tempstep_base**step)/kelvin
   END FUNCTION tempstep2temp
 
! **************************************************************************************************
!> \brief Helper routine, convertes a temperature to a discrete temp-step.
!> \param this ...
!> \param temp_in_au ...
!> \return ...
!> \author Ole Schuett
! **************************************************************************************************
   FUNCTION temp2tempstep(this, temp_in_au) RESULT(step)
      TYPE(mincrawl_type)                                :: this
      REAL(kind=dp)                                      :: temp_in_au
      INTEGER                                            :: step
 
      step = int(log(temp_in_au*kelvin)/log(this%tempstep_base))
      !WRITE(*,*) "temp: ", temp_in_au*kelvin, this%tempstep_base
      !WRITE(*,*) "step: ", step
      IF (step > this%tempstep_max) cpabort("temp2tempstep: step > tempstep_max")
   END FUNCTION temp2tempstep
 
! **************************************************************************************************
!> \brief Helper routine for mincrawl_steer
!>        Incorporates information of new report into history.
!> \param this ...
!> \param report ...
!> \author Ole Schuett
! **************************************************************************************************
   SUBROUTINE mincrawl_register_minima(this, report)
      TYPE(mincrawl_type)                                :: this
      TYPE(swarm_message_type)                           :: report
 
      INTEGER                                            :: new_mid, tempstep, wid
      LOGICAL                                            :: minima_known
      REAL(kind=dp)                                      :: report_epot
      REAL(kind=dp), DIMENSION(:), POINTER               :: report_positions
      TYPE(history_fingerprint_type)                     :: report_fp
      TYPE(minima_p_type), ALLOCATABLE, DIMENSION(:)     :: minimas_tmp
      TYPE(minima_type), POINTER                         :: new_minima, start_minima
 
      NULLIFY (start_minima, new_minima, report_positions)
 
      CALL swarm_message_get(report, "worker_id", wid)
      CALL swarm_message_get(report, "Epot", report_epot)
      CALL swarm_message_get(report, "positions", report_positions)
      CALL swarm_message_get(report, "iframe", this%workers(wid)%iframe)
 
      start_minima => this%workers(wid)%start_minima
      tempstep = this%workers(wid)%tempstep
 
      report_fp = history_fingerprint(report_epot, report_positions)
      CALL history_lookup(this%history, report_fp, minima_known)
 
      IF (ASSOCIATED(start_minima)) THEN
         start_minima%n_active = start_minima%n_active - 1
         IF (start_minima%n_active < 0) cpabort("negative n_active")
 
         ! update tempdist and escape_hist
         IF (minima_known) THEN
            CALL update_tempdist(this, start_minima%tempdist, tempstep, -1)
         ELSE
            CALL update_tempdist(this, start_minima%tempdist, tempstep, +1)
            start_minima%escape_hist(:) = eoshift(start_minima%escape_hist, 1)
            start_minima%escape_hist(1) = report_epot
         END IF
 
      END IF
 
      IF (.NOT. minima_known) THEN
         this%n_minima = this%n_minima + 1
         IF (this%n_minima > SIZE(this%minimas)) THEN
            ALLOCATE (minimas_tmp(SIZE(this%minimas)))
            minimas_tmp(:) = this%minimas
            DEALLOCATE (this%minimas)
            ALLOCATE (this%minimas(SIZE(minimas_tmp) + 1000))
            this%minimas(:SIZE(minimas_tmp)) = minimas_tmp
            DEALLOCATE (minimas_tmp)
         END IF
 
         new_mid = this%n_minima
         ALLOCATE (this%minimas(new_mid)%p)
         new_minima => this%minimas(new_mid)%p
         new_minima%id = new_mid
         ALLOCATE (new_minima%escape_hist(this%esc_hist_len))
         ALLOCATE (new_minima%tempdist(this%tempstep_max))
 
         new_minima%escape_hist(:) = report_epot !init with Epot
 
         IF (ASSOCIATED(start_minima)) THEN
            new_minima%tempdist(:) = start_minima%tempdist ! inherit tempdist
         ELSE
            new_minima%tempdist(:) = this%tempdist_init
         END IF
 
         new_minima%Epot = report_epot
         new_minima%fp = report_fp
         ALLOCATE (new_minima%pos(SIZE(report_positions)))
         new_minima%pos(:) = report_positions
 
         IF (ASSOCIATED(start_minima)) THEN
            IF (report_epot < start_minima%Epot) THEN
               start_minima%disabled = .true.
               IF (this%iw > 0) WRITE (this%iw, '(1X,A,T71,I10)') &
                  "MINCRAWL| Disabling minimum with id", start_minima%id
            END IF
         END IF
 
         IF (this%iw > 0) WRITE (this%iw, '(1X,A,T71,I10)') &
            "MINCRAWL| Adding new minima with id", new_mid
 
         CALL history_add(this%history, report_fp, id=new_mid)
         CALL write_minima_traj(this, wid, new_mid, report_epot, report_positions)
      END IF
      DEALLOCATE (report_positions)
   END SUBROUTINE mincrawl_register_minima
 
! **************************************************************************************************
!> \brief Helper routine for mincrawl_register_minima.
!>        Adds or subtracts small Gaussian from a minimum's temp-distribution.
!> \param this ...
!> \param tempdist ...
!> \param center ...
!> \param direction ...
!> \author Ole Schuett
! **************************************************************************************************
   SUBROUTINE update_tempdist(this, tempdist, center, direction)
      TYPE(mincrawl_type)                                :: this
      REAL(kind=dp), DIMENSION(:), INTENT(INOUT)         :: tempdist
      INTEGER                                            :: center, direction
 
      INTEGER                                            :: i
 
      DO i = 1, SIZE(tempdist)
         tempdist(i) = tempdist(i) + this%tempdist_update_height &
                       *real(direction, kind=dp)*exp(-((center - i)/this%tempdist_update_width)**2)
         tempdist(i) = max(0.0_dp, min(1.0_dp, tempdist(i)))
      END DO
   END SUBROUTINE update_tempdist
 
! **************************************************************************************************
!> \brief Helper routine for mincrawl_register_minima, write trajectory.
!> \param this ...
!> \param worker_id ...
!> \param minimum_id ...
!> \param Epot ...
!> \param positions ...
!> \author Ole Schuett
! **************************************************************************************************
   SUBROUTINE write_minima_traj(this, worker_id, minimum_id, Epot, positions)
      TYPE(mincrawl_type), INTENT(INOUT)                 :: this
      INTEGER, INTENT(IN)                                :: worker_id, minimum_id
      REAL(kind=dp), INTENT(IN)                          :: epot
      REAL(kind=dp), DIMENSION(:), POINTER               :: positions
 
      CHARACTER(len=default_string_length)               :: title, unit_str
      REAL(kind=dp)                                      :: unit_conv
 
      IF (this%minima_traj_unit <= 0) RETURN
 
      WRITE (title, '(A,I8,A,I5,A,F20.10)') 'minimum_id = ', minimum_id, &
         ' worker_id = ', worker_id, ' Epot = ', epot
 
      !get the conversion factor for the length unit
      CALL section_vals_val_get(this%mincrawl_section, "MINIMA_TRAJECTORY%UNIT", &
                                c_val=unit_str)
      unit_conv = cp_unit_from_cp2k(1.0_dp, trim(unit_str))
 
      CALL write_particle_coordinates(this%particle_set, &
                                      iunit=this%minima_traj_unit, &
                                      output_format=dump_xmol, &
                                      content="POS", &
                                      title=trim(title), &
                                      array=positions, &
                                      unit_conv=unit_conv)
   END SUBROUTINE write_minima_traj
 
! **************************************************************************************************
!> \brief Finalizes master for Minima Crawling
!> \param this ...
!> \author Ole Schuett
! **************************************************************************************************
   SUBROUTINE mincrawl_finalize(this)
      TYPE(mincrawl_type)                                :: this
 
      INTEGER                                            :: i
      TYPE(cp_logger_type), POINTER                      :: logger
 
      NULLIFY (logger)
 
      DO i = 1, this%n_minima
         !WRITE (*,*) "Minima: ", i, " n_sampled: ",this%minimas(i)%n_sampled
         DEALLOCATE (this%minimas(i)%p)
      END DO
 
      logger => cp_get_default_logger()
      CALL cp_print_key_finished_output(this%minima_traj_unit, logger, &
                                        this%mincrawl_section, "MINIMA_TRAJECTORY")
 
      CALL history_finalize(this%history)
   END SUBROUTINE mincrawl_finalize
 
END MODULE glbopt_mincrawl